Special

MmuEX6031202 @ mm10

Exon Skipping

Gene
Description
atlastin GTPase 3 [Source:MGI Symbol;Acc:MGI:1924270]
Coordinates
chr19:7518546-7521202:+
Coord C1 exon
chr19:7518546-7518596
Coord A exon
chr19:7520787-7520843
Coord C2 exon
chr19:7521110-7521202
Length
57 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTCTTTTTTTAAAGCTC
3' ss Score
9
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG
Seq A exon
CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG
Seq C2 exon
ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024759-'13-14,'13-13,16-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0226314=GBP=FE(5.8=100)
A:
PF0226314=GBP=FE(6.5=100)
C2:
PF0226314=GBP=FE(10.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTTGTCCCAGAATATTCAGGA
R:
ACGCTTATCCAAAAATGCCATTCC
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Ribosome-engaged transcriptomes of neuronal types
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types