MmuEX6031202 @ mm9
Exon Skipping
Gene
ENSMUSG00000024759 | Atl3
Description
atlastin GTPase 3 [Source:MGI Symbol;Acc:MGI:1924270]
Coordinates
chr19:7593036-7595692:+
Coord C1 exon
chr19:7593036-7593086
Coord A exon
chr19:7595277-7595333
Coord C2 exon
chr19:7595600-7595692
Length
57 bp
Sequences
Splice sites
3' ss Seq
TATTTTTTCTTTTTTTAAAGCTC
3' ss Score
9
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG
Seq A exon
CTCTTCACAGAATATGGCCGCCTGGCAATGGATGAAATTTTCCAAAAACCTTTTCAG
Seq C2 exon
ACACTGATGTTTTTGATTCGAGATTGGAGTTTCCCTTATGAATATAACTATGGACTGCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024759-'6-9,'6-8,7-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.8=100)
A:
PF0226314=GBP=FE(6.5=100)
C2:
PF0226314=GBP=FE(10.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTTGTCCCAGAATATTCAGGA
R:
ACGCTTATCCAAAAATGCCATTCC
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: