HsaEX0006697 @ hg38
Exon Skipping
Gene
ENSG00000184743 | ATL3
Description
atlastin GTPase 3 [Source:HGNC Symbol;Acc:HGNC:24526]
Coordinates
chr11:63644169-63651986:-
Coord C1 exon
chr11:63651936-63651986
Coord A exon
chr11:63646507-63646563
Coord C2 exon
chr11:63644169-63644261
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATAATGCTTCTTTTTTAAAGCTC
3' ss Score
6.68
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
ATTTATAATTTATCTCAGAACATTCAAGAAGATGATCTTCAACAGCTGCAG
Seq A exon
CTCTTCACAGAATACGGTCGTCTGGCAATGGATGAAATTTTCCAAAAGCCTTTCCAG
Seq C2 exon
ACACTGATGTTTTTGGTTAGAGATTGGAGTTTCCCTTATGAATATAGCTATGGACTCCAAGGAGGAATGGCATTTTTGGATAAGCGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184743_MULTIEX1-6/6=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.8=100)
A:
PF0226314=GBP=FE(6.5=100)
C2:
PF0226314=GBP=FE(10.9=100)
Main Skipping Isoform:
ENST00000398868fB10090
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCAGAACATTCAAGAAGATGATCT
R:
CTGTAAACGCTTATCCAAAAATGCCA
Band lengths:
132-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development