RnoEX0012783 @ rn6
Exon Skipping
Gene
ENSRNOG00000021203 | Atl3
Description
atlastin GTPase 3 [Source:RGD Symbol;Acc:1309871]
Coordinates
chr1:222771666-222773712:+
Coord C1 exon
chr1:222771666-222771716
Coord A exon
chr1:222773286-222773342
Coord C2 exon
chr1:222773620-222773712
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTAACTTCTCTTTTTTAAAGCTC
3' ss Score
8.98
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
ATTTACAATTTGTCCCAGAATATTCAGGAAGATGATCTTCAGCAGCTACAG
Seq A exon
CTCTTCACAGAATATGGCCGTCTGGCAATGGATGAAATTTTCCAGAAACCTTTCCAG
Seq C2 exon
ACATTAATGTTTTTGGTTCGAGACTGGAGTTTTCCTTATGAATATAACTATGGACTGCAAGGAGGAATGTCGTTTTTGGATAAGCGTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021203-'11-13,'11-11,13-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(5.8=100)
A:
PF0226314=GBP=FE(6.5=100)
C2:
PF0226314=GBP=FE(10.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAATTTGTCCCAGAATATTCAGGA
R:
ACGCTTATCCAAAAACGACATTCC
Band lengths:
134-191
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]