Special

BtaEX6103007 @ bosTau6

Exon Skipping

Gene
Description
Bos taurus atlastin GTPase 3 (ATL3), mRNA. [Source:RefSeq mRNA;Acc:NM_001098978]
Coordinates
chr29:42632032-42635815:-
Coord C1 exon
chr29:42635765-42635815
Coord A exon
chr29:42632945-42633001
Coord C2 exon
chr29:42632032-42632124
Length
57 bp
Sequences
Splice sites
3' ss Seq
ATAACTCTTCTTTTTTAAAGCTC
3' ss Score
7.29
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATTTATAATTTGTCCCAGAACATTCAAGAAGATGATCTTCAACAGCTGCAG
Seq A exon
CTCTTCACAGAATATGGTCGTCTGGCGATGGATGAAATTTTCCAAAAACCCTTCCAG
Seq C2 exon
ACACTGATGTTCCTGGTTCGAGACTGGAGTTTCCCTTATGAATACAACTATGGATTACAGGGAGGAATGTCATTTTTGGAAAAGCGTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003330-'12-8,'12-7,13-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):

C1:
PF0226314=GBP=FE(5.8=100)
A:
PF0226314=GBP=FE(6.5=100)
C2:
PF0226314=GBP=FE(10.9=100)


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
HIGH PSI
Chicken
(galGal3)
HIGH PSI
Zebrafish
(danRer10)
HIGH PSI
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCCAGAACATTCAAGAAGA
R:
TGTAGACGCTTTTCCAAAAATGACA
Band lengths:
133-190
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]