DreEX0015579 @ danRer10
Exon Skipping
Gene
ENSDARG00000004270 | atl3
Description
atlastin 3 [Source:ZFIN;Acc:ZDB-GENE-041010-109]
Coordinates
chr14:30433718-30444976:+
Coord C1 exon
chr14:30433718-30440523
Coord A exon
chr14:30444434-30444490
Coord C2 exon
chr14:30444884-30444976
Length
57 bp
Sequences
Splice sites
3' ss Seq
TGTGACATTTGTGTGTGCAGCTG
3' ss Score
8.42
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TGTCTGATATCTTATCTGGTAGTGCTTGTCGTGTAAGCAATCTGCACTTGTGCAAGTCCTGATTTCAGATTCATAGTTTCAGGTTTCTTAGGAAATTCTGTCATTTCCTCTCTGTAGTTTGCAATCTGTGATTCTGGCTTAACGTGTTTCAGGAATGATTCTCTATGTTTTACATCACTTCCAGTCACTTTCTCTCTTGTGATTTGAGAACTGCACTAAAGCAGAGCATTTTGTTCTTCTTTTTTCTAGGTTGCAGTGCTTTTAATGGACACGCAAGGAGCGTTTGATTCTCAGTCCACGGTGAAAGATTGTGCCACTATCTTTGCCCTCAGCACCATGACCAGTTCTGTCCAGGTTTCCACAACGCTCCTCTAAAATCCTGTTATAAATGAATACAGAAAAAGACTGGAAATGTGTCAGAATTATAATGGCTTCTTTTTTTTTTTTAGATTTATAACCTGTCACAGAATATTCAGGAAGATGATCTACAGCAACTTCAG
Seq A exon
CTGTTTACAGAGTATGGCCGACTTGCAATGGATGAATTCTTTCTAAAGCCTTTTCAG
Seq C2 exon
TCGCTTATGTTCTTGGTCAGAGACTGGAGTTTCCCTTATGAGTACAAATATGGGTTCAAGGGGGGAAGCAGTTTCTTGGACAAACGTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000004270-'12-8,'12-7,14-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0226314=GBP=FE(10.7=100)
A:
PF0226314=GBP=FE(6.6=100)
C2:
PF0226314=GBP=FE(11.0=100)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAAAGACTGGAAATGTGTCA
R:
AGGGAAACTCCAGTCTCTGACC
Band lengths:
142-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]