RnoEX0016656 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221349728-221351358:-
Coord C1 exon
chr1:221351301-221351358
Coord A exon
chr1:221350919-221351106
Coord C2 exon
chr1:221349728-221349792
Length
188 bp
Sequences
Splice sites
3' ss Seq
CCTGAGCTCTGTGGCCTTAGGGA
3' ss Score
5.88
5' ss Seq
GTGGTTTGT
5' ss Score
2.7
Exon sequences
Seq C1 exon
GACATGGAGATCAGTGTCAAGGAGTTACAGACCATCTTGAACAGAATCATTAGCAAAC
Seq A exon
GGAGAACAGACAGCCCATAGCAGAGCCAGCTCCAGGTGCTCAACACCAGTGAAAAGACAAGGACCTCCAGGCCAGGCTCCGTGCCTTGGGAAGCAGAATAAGATGAAATCCCAGGCCCTCTCCTGACCTGCCTTTCCCTCCTGGCTTCGGCTGCCGCATGTGGACATCCGCCTGCTCTCTTGCCTGTG
Seq C2 exon
ACAAAGACCTGCGCACTAACGGCTTCAGCCTGGAGTCGTGCCGCAGCATGGTGAACCTCATGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(31.1=100)
A:
NO
C2:
PF138331=EF-hand_8=FE(34.4=100)
Main Inclusion Isoform:
ENSRNOT00000028431fB2331
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATGGAGATCAGTGTCAAGGA
R:
TCCATGAGGTTCACCATGCTG
Band lengths:
122-310
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]