RnoEX0016658 @ rn6
Exon Skipping
Gene
ENSRNOG00000020935 | Capn1
Description
calpain 1 [Source:RGD Symbol;Acc:2267]
Coordinates
chr1:221366741-221368831:-
Coord C1 exon
chr1:221368713-221368831
Coord A exon
chr1:221367865-221368015
Coord C2 exon
chr1:221366741-221366874
Length
151 bp
Sequences
Splice sites
3' ss Seq
CCAATCTGCTCCTCTTCCAGCTT
3' ss Score
8.35
5' ss Seq
GGGGTAAAT
5' ss Score
4.46
Exon sequences
Seq C1 exon
GGGACTGTTGGCTCCTGGCTGCCATTGCCTCGCTCACTCTCAACGAGACTATCCTCCACCGAGTGGTTCCCTACGGCCAGAGCTTCCAGGAGGGCTATGCTGGCATCTTTCATTTCCAG
Seq A exon
CTTTAACTGTCCCATTCAGTACCTCGCTCCAAATCCTTCAGTGGGCCTCTTCTTACCTCATACTCTGGGCTTCCCCCTGCAACAAACTTTTGGTCCTCTCAGAAGCTTCTGTGCCCAGATCACCTCCTGATGCCTCGGCCTGCATCCTGGG
Seq C2 exon
CTGTGGCAGTTTGGGGAGTGGGTAGATGTGGTCGTGGATGATTTGCTACCCACCAAGGATGGAAAGCTGGTGTTCGTGCACTCTGCCCAGGGCAACGAGTTCTGGAGCGCTCTCCTGGAGAAAGCCTATGCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020935_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0064816=Peptidase_C2=FE(13.0=100)
A:
PF0064816=Peptidase_C2=PD(0.1=0.0)
C2:
PF0064816=Peptidase_C2=FE(14.7=100)
Main Inclusion Isoform:
ENSRNOT00000028431fB2332
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTGTTGGCTCCTGGCTG
R:
TGCATAGGCTTTCTCCAGGAGA
Band lengths:
249-400
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]