RnoEX0018920 @ rn6
Exon Skipping
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27534677-27536356:-
Coord C1 exon
chr18:27536255-27536356
Coord A exon
chr18:27535613-27535653
Coord C2 exon
chr18:27534677-27534739
Length
41 bp
Sequences
Splice sites
3' ss Seq
GATAGTATTTCGTAACTCAGGAT
3' ss Score
1.61
5' ss Seq
GAGGTATTC
5' ss Score
6.35
Exon sequences
Seq C1 exon
GGCTTAAGTCTGAAGAAGACGGTCCCTCTCTGTGGCATGGATGCCATTGAGTTGGAGGAGGAAGATTCTGACTCAGAGCATCTGACTGGTGATTTCTCAAAG
Seq A exon
GATCTTTCTGCATCAACCGCCCAGCTGCCAGGATTGTGGAG
Seq C2 exon
GCGTGTGTACTGCCAACGGTGCCAGGGAAACACCAGGATCTGAAGTATATCAGCCCAGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008-'11-16,'11-15,12-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=0.071 C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(11.0=55.9)
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSRNOT00000037368fB2717
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAAGACGGTCCCTCTCTGT
R:
CAGATCCTGGTGTTTCCCTGG
Band lengths:
132-173
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]