RnoINT0032531 @ rn6
Intron Retention
Gene
ENSRNOG00000024008 | Cdc25c
Description
cell division cycle 25C [Source:RGD Symbol;Acc:1311875]
Coordinates
chr18:27534677-27536356:-
Coord C1 exon
chr18:27536255-27536356
Coord A exon
chr18:27534740-27536254
Coord C2 exon
chr18:27534677-27534739
Length
1515 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CAGTTCTTGCTTCTTTGTAGGCG
3' ss Score
7.14
Exon sequences
Seq C1 exon
GGCTTAAGTCTGAAGAAGACGGTCCCTCTCTGTGGCATGGATGCCATTGAGTTGGAGGAGGAAGATTCTGACTCAGAGCATCTGACTGGTGATTTCTCAAAG
Seq A exon
GTGAGTTTGGTTGTATATCTCTGCCTCTTCCTCCCCTTTTCCCTCCTTTCCTTCCCACCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGTTGGTTAATTTAAAAAAATGGTAGAAAATGATAACATTTATCCCAAACCTTATCAACCAGAAAAATTATTTTTTGTATGTATTTTTAGACTTTTCTACACAAATACACACAAACAAGTGAGTTTTGTTTCCTCCACCCTGCAGCAGCAGCAACAAGAAATCCTCTTACCAACTGTGGGTCTGTCAAGGTTTTGTGTTTCTGTGTTCCTTTGTATGTCTCACCAGATAAGACACAGTAGTAGAATGCGTTTATTTTTTAGAGTAAGTGTGTGTGTGCGTGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCATATTATAATACAAAAGGAAAGCTTGTGGGAGTTGGTTTTCTCCATTCACTGTGTAGGTCCTGGGGATTGAACTCAAGTTTTCAGGCTTGGTGGCAAGCACCTCACCAAGGGGTCCTATCTCTGGTCCTGTGGTCCTGTTTTTTAAAGATAGTATTTCGTAACTCAGGATCTTTCTGCATCAACCGCCCAGCTGCCAGGATTGTGGAGGTATTCTGATGTGCTTGCACTTTTACTCTTGGTTTGGGGTATGTGGGGGGCTATGTGTGCTTCAGTGTGTAAATGCTTGTGGACACTGTAGGTCAGCCTCGGATGGAGCTCCTCAGGAGCTGTCACCTTGTACTTTGAGACAGGGTCTCACTGGGACCTAGGGCTTGAGGTAAACTAGACTGGCTGGCCAGCAACCCCAGGGATCCTCGTGCCCATGCTTCTCCAGCTCGGGGTTACTAATGTATGCCATCCTACCTAGGTTTATTTGTGCATGCTAGGATCAAACATAGGTCCTCAAACGTGCATTATATACCAACTGTTTACCCGGTTTACGCCTCACCATGTTATCGTTAACAACAATAGTAAAAAGACTTGTTTTCTCATATACACACACGCACACACAGATATATATGAGTGCACATTGGAAGAGGGAATCAGATCCCATTACAGATGGTTATGAATGAGCCATTTCTCCAGCTCTTCGAGTATATGTATGGGCAAGTGAGCCGTAATGAGGTGCTGAGACGTGAACACTGGTCCTTCAAAAGAGCAGCAAGTGCTCTTAACCACTACAGAGGTCTCTAGCCCCTCATTTCACCATTAAAGAAATAAAAAAGATGTAGCCAGACATGTTTGCCTTTAATACAAACACTTAGGAGGCAGAGGCAGGCAGATCTCGGAGTTCAAGGATAGCCTGGTCTACAGAGCTAGTCAGGAAAGCCAGGGCTACACTGAGAAATCAAATAAAAAAAAAAAAAAAAAAAAAAAAAACGAACAAGAAAAGAATCGCTTGGAAAAGGCAGTTTGGGAGTGTCTATTGTGATGCTTGGGTGGGAAGTTCCTGCAGTTATTTCAGTTCTTGCTTCTTTGTAG
Seq C2 exon
GCGTGTGTACTGCCAACGGTGCCAGGGAAACACCAGGATCTGAAGTATATCAGCCCAGATACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024008:ENSRNOT00000037368:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.353 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(11.0=55.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]