GgaINT0090386 @ galGal4
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
M-phase inducer phosphatase 1 [Source:RefSeq peptide;Acc:NP_001186501]
Coordinates
chr2:574907-575412:+
Coord C1 exon
chr2:574907-574999
Coord A exon
chr2:575000-575349
Coord C2 exon
chr2:575350-575412
Length
350 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
AAATGCTGTCTGTTTTCTAGGGT
3' ss Score
8.99
Exon sequences
Seq C1 exon
AACACAAAAATAGTAAAGACACAGTCCTCTGCAGCAGAAATTGAGAGCATTTTGGCCAGTGACCAGAGGGACCTTATTGGTGACTTCTCAAAG
Seq A exon
GTAATTACATGATTTGGTTTAATGGTCTCTTTTAGAGAGGTGTTATGGACCAACCCCAAGTAAAGCGCTTCCCTTCTTCAGAGCACGTCCCCCAGTCACTGGTGAAGGCTGCCAGTGAGAATGGTGCTGCTGTAGACCAGTCCTGAAGCGATCTGTACAAGATCTTCAGTGTAGGAGCCAAGGAAAAGCTGTGTCCATGAGCCTTGGGGCTCTGCAGTTATAAATTCTGTGCTTAGCTCAAGAGATCCATGTCAGTGCAGTGTGTGTGGTGTGAAGCTGGCTGCTGGTGCTGCACTGAGCGTGTGGCTCATGGCTGGAATGTTCCCTGCTAAATGCTGTCTGTTTTCTAG
Seq C2 exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.129 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(11.4=51.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]