GgaINT0090386 @ galGal3
Intron Retention
Gene
ENSGALG00000004934 | CDC25A
Description
NA
Coordinates
chr2:481111-481616:+
Coord C1 exon
chr2:481111-481203
Coord A exon
chr2:481204-481553
Coord C2 exon
chr2:481554-481616
Length
350 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATT
5' ss Score
8.83
3' ss Seq
AAATGCTGTCTGTTTTCTAGGGT
3' ss Score
8.99
Exon sequences
Seq C1 exon
AACACAAAAATAGTAAAGACACAGTCCTCTGCAGCAGAAATTGAGAGCATTTTGGCCAGTGACCAGAGGGACCTTATTGGTGACTTCTCAAAG
Seq A exon
GTAATTACATGATTTGGTTTAATGGTCTCTTTTAGAGAGGTGTTATGGACCAACCCCAAGTAAAGCGCTTCCCTTCTTCAGAGCACGTCCCCCAGTCACTGGTGAAGGCTGCCAGTGAGAATGGTGCTGCTGTAGACCAGTCCTGAAGCGATCTGTACAAGATCTTCAGTGTAGGAGCCAAGGAAAAGCTGTGTCCATGAGCCTTGGGGCTCTGCAGTTATAAATTCTGTGCTTAGCTCAAGAGATCCATGTCAGTGCAGTGTGTGTGGTGTGAAGCTGGCTGCTGGTGCTGCACTGAGCGTGTGGCTCATGGCTGGAATGTTCCCTGCTAAATGCTGTCTGTTTTCTAG
Seq C2 exon
GGTTATTTGTTCCACACTGTTGATGGGAAGCATCAAGATTTAAAATACATCGACTCAGAAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004934:ENSGALT00000007893:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.194 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(6.5=51.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]