MmuINT0032726 @ mm9
Intron Retention
Gene
ENSMUSG00000032477 | Cdc25a
Description
cell division cycle 25 homolog A (S. pombe) [Source:MGI Symbol;Acc:MGI:103198]
Coordinates
chr9:109789752-109791440:+
Coord C1 exon
chr9:109789752-109789850
Coord A exon
chr9:109789851-109791377
Coord C2 exon
chr9:109791378-109791440
Length
1527 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
CTTTTTTTCATTTTCTAAAGGGT
3' ss Score
8.56
Exon sequences
Seq C1 exon
CTTCCATCCCAGTCTCTATCCCTGATGTCTTCCCCCAAAGGAACCATTGAGAACATTTTGGACAGTGACCCAAGAGACCTTATAGGAGATTTCTCCAAG
Seq A exon
GTAACTGCAAGCAGAGTCACTCTAGTCCGGTGGTGTTGGCAAGGGGTGCTAGAACCCCACTTACCTTGCTCCTTCCTTCCTCAAGGCAGCCCCTGGGTGCCGCCAAGGCAGCAGTTTTAAAAGTAAAAGCTAAAGAACAATCAGCTCAGCTGAACTTGTCAGGATGAGGCACGTGGTGGTCATGAGACTTGCTGGCTCGGTGGTTCCCTGTACGGTTACCTTCACTCTGACCAGTGTGTCTGGGAAAGCATGAGCCTGAGCTATGGTACAGTACAGCTAGCCATGATGGCCCACATCTTTAATCTTAGCATTTGTAAGGCAGAGCTAGACAGACTGAAGCCAGCCTGGTCTATACAGTAACTTCAAGGACCAGGGCTATATAGAGAGAGACCCTGTCTAAAAAGAACAAAACAAGGAAGAACAAGGAGTTTTTGAGGGGGATAAACAGCACTGAGTAGCACTGAGGTGTTCGTCCTTGTTAGGCTTGGGCCAAGATGTTCTTCCATTCTCACTACCTAACTCCATCCTGAGCAACCAGGTGCCCATCACATGAGCAAGTTGTCTCGCTTTCCAAGGCGTGGCCTCACTATTTTACCCAAATTAACCTAGTTCTACTGCCTCAGCCTACAGTACCACACCCACTGTCTTTGTGGTTTTATTTGTTACAGAACCACCTCATATTCTAAGTTGGCTCCAAACTCCAAACTAGGGATGCTCTTGAACTTATATCCTCCTCCCAAATGCTGTTATTATATTCCTGAGTCACACCTGATCTCCTCACTGCGTGTGTGTTTGCTGTTCCAGACACAGTTCCTCTATGCAGTCCTGACTGTCCTGGAACTCGTTGTAGTCCCTACTGGCTTTGAACTCAGAGATCGCCTGCCTCTGCCTCCTCCCAACCCCTAATGCTAGGACTAAACTTGTACCACAACGGCCTGACTGTCCTCTCTGCATTTAAGTGATTTCTCATACTAAGATGAGAATTCCTGATAAAAAAACAGGAGGGGGGTGGGGGAAGGTGCCGGGCGGTGCTGCAGCTACTGCACACCTTTAATCTCAGCATTCCAACGGCAGGCAGGTCTCTGTGTCTGAGGATACATAGAGAAACCCTGTCTTGAAAAACAAAACAAAACAAAACAGTAACAAAAGAAAAGCCAGTGGAGAAAGGAAATGACCTGTGGTTTCTGTGTTCAGATCTAGACTCGGGACTCCTTAGGTGGTAAGACCAGACCCAGAGGGTGAGCATAATCATTTACTAACTTACCCCAGGAGCAGGCTCACCTCGGAGTCTGGAGCTGGACTGCTCTACATAATGAAAACATATCTCCTTAAACAATAATAATTAAATATCTAGATGTTGATTAAGTGCATAGAAAGGTAATTAGCATATAGTATTGACTTATGTTTGTTTCTCGGTTTGTTTTTCAAGCTGCTTCCTACCACACAGGCAGCAGAATAAACCTTAATATTTGCAAGCTTTCACGTTCCTCTAAATATTTTCTGTTTCCTTTTTTTCATTTTCTAAAG
Seq C2 exon
GGTTATCTCTTTAATACAGTCTCTGGGAAGCATCAGGATTTGAAATATATTTCTCCAGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032477-Cdc25a:NM_007658:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(7.7=54.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: