BtaINT0034902 @ bosTau6
Intron Retention
Gene
ENSBTAG00000009586 | CDC25A
Description
Bos taurus cell division cycle 25 homolog A (S. pombe) (CDC25A), mRNA. [Source:RefSeq mRNA;Acc:NM_001101100]
Coordinates
chr22:52259135-52261091:+
Coord C1 exon
chr22:52259135-52259236
Coord A exon
chr22:52259237-52261028
Coord C2 exon
chr22:52261029-52261091
Length
1792 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TATTTCTTTCTCTTATTAAGGGT
3' ss Score
8.57
Exon sequences
Seq C1 exon
ATTCTACATCATCAGTCTTTATCCCTAGCATCTTCCCCAAAAGGGACCATTGAGAACATTTTGGATAATGACCCAAGGGACCTTATAGGAGACTTCTCCAAG
Seq A exon
GTAACTGCAAGCAGAACTGCATCATGATGCAGGACGGGGGAGGTACCTAACACCCCCTCCAGCCTTGCTCCCCTGAAGTGGCTCCTGGGTTATGTAGCCTCCCTTCCAACCCCCACCGAGGGGACACAGTTTGAAATTAAAAAAAAAAAAAAGGAACATTCATAATCTGGTATACCTCCATTTCTTGGGGACTGTAGACCTTACTGGTGCTGATCAGAGGTTTCACGTAGGGAGCCTGGACACCAACCCAAAACCCAGTCTTTCTGGGAACAGTGCTACAGAAGAGTGTAAAGAAGCAGCAATGAAACTCTAGCCTTGCTGTATATAAGTCTGTATGTCAGAAGGTCCTCTTAGGGGACTTCCCTGGTGGTCCAGCAGCTGAGATTCCGTGCTCCCAACGCAGGGGGCCTGGGTCCAATCCCTGGTCAGGGAACTAGATCCCACACACCACAATAAAAAAATTCTGCATGCCAAAGATTGAAGATTCTGTGTGCCAAAACTAAGTCTGTGCAGCTAAATTAATTAATTAATTAATTTTTTAAAAAAGAAAGTCATCTTAGAATGTCCCAGATGAAGACTAAATTTCTCCCTTGTCCAGAGGAGCATGGTCCTTGTGGGAAAATGCCCCCAGGGAGGTCCAGAGGAAGGTCTGCTGATGGCCTGGTACAGATTATCCACCTTTGTGCTGTGGTCAAATGTGACACCTTCCTGTGTCAGTAGTAACTTGTTTAGCCATGTGTAACTTGAAGGTCCCCAGACCAGTCTTTTACATATTAATGTAGCTAACATCTACTGAAACACTTACTATGTGTAAGGCAAAGATTCCAAAGCAAGACACAGTTCCTTCCCTCAAGACACTTAACATGTGGTAAGACATGCCACGTGGACATGTACCACCTGGTAATTGAAGTAAACATCAGTACAGTGTAAGCATTAGACTAAGAAATAAAAGAGTTATGTCAACTGGGTGATTGGGGAAGCTCTGGGGCTGGGCTAGACATTTCAGCCAGGTAGGAGAGATAAGTGGGAAGACAGGACTTCCCTAGGGGTCCAGCGGTTAAGACTGCACTTCTAACACTAGGGACACGGGTTCAATCCCTGGTCTGAGAGCTAAGGTCCCACATGCCAGCATGGCCAAAAAAAATAGAAGACAGTTCTAGTCTGAAGGGAAGAGCAGGCCAAGACCTGGGTGTGGTGTGTCCTCGCTGGTAAAAGCTTGCATCTGAATTGAAGCTATTGGTTGGTTGTTGAAATGACCCCACACATGACCACAGGGTTGGGTGAGCACTAGACTCTGCCAGTCACTCTCGTAATTGCTGGTGTGCCCATCTTCCCCCCTCAAGGCTGGGTGGGTCTCACTTATTCCACCTCCAGTGTCTCCTCCAGCGCCATGCTGCAAAAGTCAGGTGCTCAGTAAACAGTGAAGTCATTCCTTGCTGTGTCCTTTTTAAGTGGTGAGCACAGTCTGGCTGCTGACCTGAGGGTTCCTGACAAAAGCAGGCGATAAAGGAATTCACCTGAGATGTCTGGATTCAGGTCTGGCTTGCTTGCTGGCTGACTTTGGGCAAGGGGCCTAGTTTTGACATCTACAAATGGGGATAATGTGCCTCATAGGGCCATATGAATATTCAGTCTTAGGATATTAATGAAGTGCTTACACAAATAACGAGTACGTTCTATTAGATGCATGTTTGTTTGTTTGTTTAAACTGACTTTTACCAGGAAGGCAAGCACTATAAATGTTCCCTTTATAAGCTTTCAGATTTGCTAAGTATTTCTTTCTCTTATTAAG
Seq C2 exon
GGTTACCTCTTTCATACCGTTGCTGGAAAGCATCAGGATTTAAAATACATCTCTCCAGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009586:ENSBTAT00000012611:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.235 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(7.7=55.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]