RnoINT0032503 @ rn6
Intron Retention
Gene
ENSRNOG00000020737 | Cdc25a
Description
cell division cycle 25A [Source:RGD Symbol;Acc:621498]
Coordinates
chr8:117964991-117966975:+
Coord C1 exon
chr8:117964991-117965089
Coord A exon
chr8:117965090-117966912
Coord C2 exon
chr8:117966913-117966975
Length
1823 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACT
5' ss Score
9.01
3' ss Seq
TTCTGTCTCCTTTTCTAAAGGGT
3' ss Score
7.98
Exon sequences
Seq C1 exon
CTTCCACACCAGTCTCTCTCCCTGACATCTTTCCCCAAAGGAACCATTGAGAACATTTTGGACAGTGACCCAAGAGACCTTATAGGGGATTTCTCCAAG
Seq A exon
GTAACTGCAAGCAGAGCTCCTCCAGTTGGGTGGTGCTGACAAGGGGTGCTGGACCCCCACTTAGCCCTTCTCCTTCCTCACAGTGGCCCCTGGGGTGCCTCCAAGGTTTAAGAGGAAAAAATAAGGAACAAGTTGAACTTGTTGGGATGAGGTACATGTTGGTCATCAGATGCTGGCTCAATGGTTTCTTACATGGTTGGCCACCTTTACTCTGACCCATATTGCAGACTTTCTGGGCACTGGGCTTCTGCCTATAAATACAATATGCATGAGTAGCTGCACTCTGAGTGCTTGTGTGGATACCGTGTCTTAGAAGGTCCAGATTTGACCCTAAATTGTTGCAGATATTCAGAGGCATGGCCAGAGAGGGATTAGGCTTTAAAGGAAGTCATGGTGACCTAACATGAAGTAAGAGCAGCAGGCTGTAAGAAGTAGTGGGATCTTTGAACCTGTTGCTGCCTGGCTGGTTTCCTGTATGGTTACCCACCTTTAACCTTAGCGCTTGTAAGGCAGAGGCAGACAGACTGAAACCAGCCCGGTCTGTATAATAACTTCAAGGACAGTGGGGCTATATATAGAGACCCTGTCTTTTGGGGGAGACAGAGGAGGGGGGTTGGGAACATGGAGTTTAAGGGGGAGAAACAAGCAAAGCCCTGTGTAAGCTTCGACTTGAGTCAGAGCTATTGGTCAGTGGCAGGTAAGCTATAATTCATCCAGTTCTTCTCTAAGTAGCACTGAGGCTTTCGTCTTTGTTAAGCCTGGGCCAAGATGGTCCTTCCATTCTCACTACCTGTACCATACTGGGCAATCAGGTACTCATCAGATGAGCAAGTTGGTTTACTTTCCAAGGCTTGCTCTCACCACCTCACCCAAACTGACCCAACTGTGCAGTTCTCCTGCCGCAGCCTCTCAGTGCTGGGGTTGTAGCACACAGCACCATGCCCATTCTCTCTGCTTTTATTTGTTACAGAGACTCATAAGTTGGCCTCAAAGCTATACTCAGGCTGGGGATGATCTTGAACTCCTATCCTCCTCCCAAAGGCTGTTGTTACAGATCTGAGTCACACTTGCTCTCCTCCATGTAGCCCTCGCTGTCCTGGAACTCATGTTGTAGCCCCTACCAGCTTTGAACTCCAAGATCCACCTGCCTCTGCCTCTTCCCACACCCCAGTGTTGGGACTAAACTTGTGTGCCACTGCAACTGAGCCTTCCTCACTGCATTTAAACGATTTTTTTTTCATACTCTAGCCATTGAGATGAGAGTTCCTGGTAAAAACAGAAGGAAAAAATGCCAGGTGGTGGTGCTGCTACTGCGCACCTTTAAGATCAGCACTGCAAAGGCAGGCAGGTCTGAGTCTGGGACAGCCTAGTTCACAGACTTGAGTTCAGGATGGCCAGGGCTACATCAAGAAACCCTGTCTTGAAAAACAGAGCAAAACAATAACAAAAGAGCCAGAGGACGAAGGAAATCACCTGTGATTTCTGTGTTCAAATCTAAAGTCAGGATTTCTAGTTCTAAGCCAGCCTGGTCTATGTGTGTAATAAGACTGCCTCAGACTATAAGCATAGTGACTTACTTTAATTGCAGAAGCTAAACTGACCTATGTAATGAAAACACGTCTCCTTAAACAATAATAATTAAATATCTAGATTTTGGGTGCATAGAAAGGTAGTTAGCATATACTATTTGCTTATGTTTGTTTCTGGTTTGTTTTTTGTGCTGCTTCCTACCAGCCAGGCAGCAGGATAAAGTTTGGATAAAGCAGGATAATATTTGGAAACTTTCACATTACCCTAAATGTCTTCTGTCTCCTTTTCTAAAG
Seq C2 exon
GGTTACCTCTTTCATACGGTCTCTGGGAAGCATCAGGATTTGAAATATATTTCTCCAGAAATT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020737:ENSRNOT00000028141:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.212 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(7.3=54.5)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]