MmuINT0032755 @ mm10
Intron Retention
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25C [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34738216-34740429:-
Coord C1 exon
chr18:34740328-34740429
Coord A exon
chr18:34738279-34740327
Coord C2 exon
chr18:34738216-34738278
Length
2049 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
3' ss Seq
CAGTTCTCGGGTCTTTCCAGGTG
3' ss Score
7.2
Exon sequences
Seq C1 exon
GGCTTAAGTCTAAGGAAGATGGTCCCACTCTGTGACATGAACGCCATTCAGATGGAGGAGGAAGAGTCTGGCTCAGAGCTTCTGATTGGTGATTTCTCAAAG
Seq A exon
GTGCATTTGGCTGGATATACTCTTCCCCTCTCCTCTCCCTCTCCTTCTCCTCTCTTCCTCCTTTCCTTCCCCCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTTAATACAAAAACTTGGTAGAAAGTGATAACATTTATCCCAAACCTTATCAACCAGAAAAAATATTTTTTATATTTATTTCTAGACTTTTCTACACAAATACAAACAAGTGAGTTTTGTATGCTTCACACACACACACACACACACACACACACACACACACACACACACACACACCACGGCAACAACAACAAATCCTCTTACCCCACTGTGGGTCTGTTGAGGTTTTGTGTTTCTCTGTTGCTTTGTATCGTCTCGCTAGGACGAGATACGGTGATAGAGTGTGTTTGTTTTTTAGAGTAAGTGTATGTGTGCATGAGGATGTGTGTGTGTTCGTATCATAACAGAGAAGCAACGCTTGAGGGAGTCGGCTTTCTCCACTCACTATGTGGGTCCTGGGCATTGAACTCAAGTTTTCAGGCTTGCTGGCACGTGCCTCTGTGGTTCTGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTAAATTTTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGTGGTTCTGTTTTTTTACAGATAGTATATTGTAGCTCAGAATCCTCCTGACTACCGGGATTATGGATGTATTTTGATGTGCTTGCACATTTTATCTTCTGGTTTGGGGTGTACGGGGTGCTGTGTGTGCTTTAGTGTGTATATACCTGTGAAAGCCATAGGTCAGCCTTGGACAGTGTCCTCAGGAGCTGTCACCTTGTGTTTTGAGACAGGGGCTCACTGGCACCTAGGACTTGCAGATAAACAAGTCTGGCTGGCCAGCAAGCCCCAAGGATCTTTGTGCCCATGCTTCTCAGCTCTGGGATTACAAATGCATGCCATCCTACCAAACGTAGCTCCTCATAATTACATGATTTCACCAACTGAGCAGTTTACCCGGCCCCATGTTATCATTAACACCAATAGTAAAAAGTCTTGTTTATTTTTATTTTTTAAGCCTTTTTCTTTTTTTTAAAATATTTATATACATATATACACACATATACGCATATTTGAGTGATCTGTCATTGTGCATAACGGAAGAGGGAATCAGATCCCATTTAGATGGTTATGAGCCATTTCTCCAGCCCTATTTTATATTTGTATGTATTTTCCCTGAATATATGTATGGGCAAGTGAGCCATAATGTGGTTGCTGGGAAGTGGACATTGGTCCTTCGGAAAAGCAGCAAGTGCTCTTAACCACTGTGCAAGGTCTCTAGCCCCCCATTTCATCATTAAAGAAATAAGAAAAGATTTAGCCTTGCCTTTAATACAAACACTCAGGAGGCAGAGGCAGGCAGATCTCTGTGAATTCAAGGTCAGGCTGGTCTACAGTGTGAGTTCCAAGACAGCCAAAGTTTCATAGTTTTTTTTTTTTTACTCTCAAAAACCAACAACAAAATATTTTTATTTTATGTGTATGGATGTTGTGCTTGCATGTATGTCTGTACACATCTGTGCAGTGTCGTCAGAGGCCACAAGAGGGTGTCAAATCTACTGGCACTAGAGCTAGAGATAGTTTTGACCCACCACCTGTGTGTGGTATCTGAACCCAGGTCCTCTGGAAGAACAACTAAGTATTCTTAACCACTGCGCTATCTCCGCAGACCCTTATTTCATCATTTTCAATAGCTGTTTATTAGTTAGTTAACTTTTTGGCTACTCATAATTTCTCTACCAATCCCTTCTTGTGGGATAGTCGCTTGGAAAGGACCATATGGGAGGGTTTGTTGGGATGCTATGGGGGGGAATTCCTGCTGTTATTTCAGTTCTCGGGTCTTTCCAG
Seq C2 exon
GTGTGTGTGCTGCCAACGGTGCCAGGGAAACACCCGGATCTGAAGTATATCAGCCCAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201:ENSMUST00000060710:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(10.5=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types