HsaINT0031573 @ hg19
Intron Retention
Gene
ENSG00000158402 | CDC25C
Description
cell division cycle 25 homolog C (S. pombe) [Source:HGNC Symbol;Acc:1727]
Coordinates
chr5:137625190-137626429:-
Coord C1 exon
chr5:137626328-137626429
Coord A exon
chr5:137625253-137626327
Coord C2 exon
chr5:137625190-137625252
Length
1075 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CAGCTCTTGTGTATTTCTAGGTA
3' ss Score
8
Exon sequences
Seq C1 exon
GGCTTATGTTTAAAGAAGACAGTCTCTCTGTGTGACATTACTATCACTCAGATGCTGGAGGAAGATTCTAACCAGGGGCACCTGATTGGTGATTTTTCCAAG
Seq A exon
GTGAGTTTGGCTACACCCATCCTGTATTTCAGTGAGTCATTTTGGATCTGAATCTTCTCTGTTTGCCGAGAATGCCTGGTGTAAATATGCATCCTCACCAAGTACTCTTTGGTAACCTGACAGTGCTCTAGTGGTAGATCCAGGCCCTAAGCCTTTCCAGAGAGAAAGTATTTCTTATTCTTCTGGGAAGATCCAGAACAGGGGAAAGTATGAGACTTTTTACCTTTTTTCTGTTTAAAAACATATTTTAAAATTATGTAAATAATACTTGGTTGTTACAGAAAAAGTAGAAAATGAAGAAATTTATCCCAAACTTTATTAACCAGGGTAATATTGCTTAGTATATACTCTTTTTTTCCCCCCTACTGTCTGTGTAATTGCAGAAGGTACATATTCTTACAGATTTTTTTCTGTGTTTTCACAAACACATATACAAATACAGTTTTTGCTTTTCTACAAAAACAGTTTATATTGTTTTGTTATCTGTTGTTTTTCCTCTCATTTAATAATTATATCAGGGGCATCTTTTTTCATATTAATAAGCAGTTATGCTTCATTCTTTCTTTTTTTAAGATTCAAGGTCTTGATCTGTTGCCCAGGCTGGAGTACATTGGCATGATCATAGCTCACTTCAGCCTCGAGCTCCTGGCCTCAAGAAATCCTCTCTCTCCTTGGCTTCCCAAAGCACTGAGGTTACAGGCATGAGCCACCATGCCCAGCCCATTTCATTTTAATAGCTCCATATTATTTCTTTTTTTTTTTTTTTTGGCTGCTCATAATTTCTTCATAAATCCCTTCTTGTAAGATATTTGGTTTTACAATTTTTTCTTATGAATGATACCAAGATGAATATATTTGTAGAGAAATCTAAAACTTCGTACACATCCTTGATTTGTTCTTTAGGATCAGTTCTTAGAAATGGACTTGATGTATATGCACTTTATAGAGACACTGATTTTTTTGAAGGCCTCTGGGGTTTTAAGGGTCACTTGGAAAGAAGGACAAAATAAGGGTCTTTGATCTCAAACTTGGGTGTGGAATACTTGCTGTTATTTCAGCTCTTGTGTATTTCTAG
Seq C2 exon
GTATGTGCGCTGCCAACCGTGTCAGGGAAACACCAAGATCTGAAGTATGTCAACCCAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000158402-CDC25C:NM_001790:9
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(14.3=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)