MmuINT0032755 @ mm9
Intron Retention
Gene
ENSMUSG00000044201 | Cdc25c
Description
cell division cycle 25 homolog C (S. pombe) [Source:MGI Symbol;Acc:MGI:88350]
Coordinates
chr18:34897870-34900083:-
Coord C1 exon
chr18:34899982-34900083
Coord A exon
chr18:34897933-34899981
Coord C2 exon
chr18:34897870-34897932
Length
2049 bp
Sequences
Splice sites
5' ss Seq
AAGGTGCAT
5' ss Score
4.62
3' ss Seq
CAGTTCTCGGGTCTTTCCAGGTG
3' ss Score
7.2
Exon sequences
Seq C1 exon
GGCTTAAGTCTAAGGAAGATGGTCCCACTCTGTGACATGAACGCCATTCAGATGGAGGAGGAAGAGTCTGGCTCAGAGCTTCTGATTGGTGATTTCTCAAAG
Seq A exon
GTGCATTTGGCTGGATATACTCTTCCCCTCTCCTCTCCCTCTCCTTCTCCTCTCTTCCTCCTTTCCTTCCCCCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTGGTTAATACAAAAACTTGGTAGAAAGTGATAACATTTATCCCAAACCTTATCAACCAGAAAAAATATTTTTTATATTTATTTCTAGACTTTTCTACACAAATACAAACAAGTGAGTTTTGTATGCTTCACACACACACACACACACACACACACACACACACACACACACACACACACCACGGCAACAACAACAAATCCTCTTACCCCACTGTGGGTCTGTTGAGGTTTTGTGTTTCTCTGTTGCTTTGTATCGTCTCGCTAGGACGAGATACGGTGATAGAGTGTGTTTGTTTTTTAGAGTAAGTGTATGTGTGCATGAGGATGTGTGTGTGTTCGTATCATAACAGAGAAGCAACGCTTGAGGGAGTCGGCTTTCTCCACTCACTATGTGGGTCCTGGGCATTGAACTCAAGTTTTCAGGCTTGCTGGCACGTGCCTCTGTGGTTCTGGTTTTTTTGTTTGTTTGTTTGTTTGTTTGTTTTTTAAATTTTTATTTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGAGTCAGATCTCATTACGGGTGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCCGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCGTGGTTCTGTTTTTTTACAGATAGTATATTGTAGCTCAGAATCCTCCTGACTACCGGGATTATGGATGTATTTTGATGTGCTTGCACATTTTATCTTCTGGTTTGGGGTGTACGGGGTGCTGTGTGTGCTTTAGTGTGTATATACCTGTGAAAGCCATAGGTCAGCCTTGGACAGTGTCCTCAGGAGCTGTCACCTTGTGTTTTGAGACAGGGGCTCACTGGCACCTAGGACTTGCAGATAAACAAGTCTGGCTGGCCAGCAAGCCCCAAGGATCTTTGTGCCCATGCTTCTCAGCTCTGGGATTACAAATGCATGCCATCCTACCAAACGTAGCTCCTCATAATTACATGATTTCACCAACTGAGCAGTTTACCCGGCCCCATGTTATCATTAACACCAATAGTAAAAAGTCTTGTTTATTTTTATTTTTTAAGCCTTTTTCTTTTTTTTAAAATATTTATATACATATATACACACATATACGCATATTTGAGTGATCTGTCATTGTGCATAACGGAAGAGGGAATCAGATCCCATTTAGATGGTTATGAGCCATTTCTCCAGCCCTATTTTATATTTGTATGTATTTTCCCTGAATATATGTATGGGCAAGTGAGCCATAATGTGGTTGCTGGGAAGTGGACATTGGTCCTTCGGAAAAGCAGCAAGTGCTCTTAACCACTGTGCAAGGTCTCTAGCCCCCCATTTCATCATTAAAGAAATAAGAAAAGATTTAGCCTTGCCTTTAATACAAACACTCAGGAGGCAGAGGCAGGCAGATCTCTGTGAATTCAAGGTCAGGCTGGTCTACAGTGTGAGTTCCAAGACAGCCAAAGTTTCATAGTTTTTTTTTTTTTACTCTCAAAAACCAACAACAAAATATTTTTATTTTATGTGTATGGATGTTGTGCTTGCATGTATGTCTGTACACATCTGTGCAGTGTCGTCAGAGGCCACAAGAGGGTGTCAAATCTACTGGCACTAGAGCTAGAGATAGTTTTGACCCACCACCTGTGTGTGGTATCTGAACCCAGGTCCTCTGGAAGAACAACTAAGTATTCTTAACCACTGCGCTATCTCCGCAGACCCTTATTTCATCATTTTCAATAGCTGTTTATTAGTTAGTTAACTTTTTGGCTACTCATAATTTCTCTACCAATCCCTTCTTGTGGGATAGTCGCTTGGAAAGGACCATATGGGAGGGTTTGTTGGGATGCTATGGGGGGGAATTCCTGCTGTTATTTCAGTTCTCGGGTCTTTCCAG
Seq C2 exon
GTGTGTGTGCTGCCAACGGTGCCAGGGAAACACCCGGATCTGAAGTATATCAGCCCAGACACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044201-Cdc25c:NM_009860:10
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF066178=M-inducer_phosp=PD(10.5=50.0)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: