RnoEX0020303 @ rn6
Exon Skipping
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196492969-196493599:+
Coord C1 exon
chr2:196492969-196493086
Coord A exon
chr2:196493296-196493387
Coord C2 exon
chr2:196493542-196493599
Length
92 bp
Sequences
Splice sites
3' ss Seq
TAGACCTTTTGTCTCGGCAGAGT
3' ss Score
6.6
5' ss Seq
CAGGTGGGG
5' ss Score
6.92
Exon sequences
Seq C1 exon
TTATGTGGCTACACCCCTGGCTGCCCTCCTGAATGTTAAGGAGAAAACCCGACTGCGGGCACCTCCCAATGCCACCTTAGAGCATTTCTACCTGACCGTCGGCAAGCAGCCCAAGCAG
Seq A exon
AGTGGGCTCTCTGGACGCCAGGTAGAACGTTGGTTCCGCCGCCGCCGCAACCAGGACAGGCCCAGTCTTCTCAAGAAGTTCCGAGAAGCCAG
Seq C2 exon
CTGGAGATTCACATATTACCTCATTGCCTTTGTTGCTGGCATGGCTGTCACTGTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138-'14-9,'14-8,15-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(45.6=65.0)
A:
PF0379811=TRAM_LAG1_CLN8=PU(2.6=16.1)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTACACCCCTGGCTG
R:
ATCCACAGTGACAGCCATGC
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]