GgaEX1000089 @ galGal3
Exon Skipping
Gene
ENSGALG00000000406 | F1NRZ0_CHICK
Description
NA
Coordinates
chr28:521084-524195:+
Coord C1 exon
chr28:521084-521201
Coord A exon
chr28:522926-523044
Coord C2 exon
chr28:524138-524195
Length
119 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCATCTGTTCTGCAGGGT
3' ss Score
10.4
5' ss Seq
GAGGTAGGT
5' ss Score
9.65
Exon sequences
Seq C1 exon
AACCATAGCTCTGCCCCTGGGCAGGAGGCTGGGAGTGAGAGACAAGCGGAGGCCCAAAGCTCAGCCCAGTGCCACACTGGAAGGCTTCTACAAGCTGCTGGGCAGGACTCCAAAGGAG
Seq A exon
GGTGACCTGATTTCAGTGGCCAAGCAAAGTGGCCTGCCAGTCAGAACAGTGCAGACCTGGTTCCGGCACCGGCGGGCCCAGGACCATCCCAGACTTACAAAGAGGTTCTGTGAGGCGAG
Seq C2 exon
CTGGAGATTCACGTTCTATTTCACATCGTTCTTCTCTGGGGTGGCTCTCCTATACGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.025 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(46.4=65.0)
A:
PF0004624=Homeobox=PD(50.0=70.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
C2:
PF0379811=TRAM_LAG1_CLN8=FE(9.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATAGCTCTGCCCCTGG
R:
CGTATAGGAGAGCCACCCCAG
Band lengths:
174-293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]