GgaEX6027660 @ galGal3
Exon Skipping
Gene
ENSGALG00000000406 | F1NRZ0_CHICK
Description
NA
Coordinates
chr28:519738-523044:+
Coord C1 exon
chr28:519738-519907
Coord A exon
chr28:521084-521201
Coord C2 exon
chr28:522926-523044
Length
118 bp
Sequences
Splice sites
3' ss Seq
AACTCTCTTTCCTCTCACAGAAC
3' ss Score
10.51
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
AGGATGGGACTGTCGGAGGAGCTCTGGCACCACCAGTACTGGCTGCCACCTGGAGCCACCTGGGAAGACATGAAGGAGTCTGCGGACACACACTACCCAAAGCCTCAGGACCTCTGGCTGTGCCTCCCCGGTGCTCTGCTCCTGATCGTTGTCCGATGCATCTTTGAAAG
Seq A exon
AACCATAGCTCTGCCCCTGGGCAGGAGGCTGGGAGTGAGAGACAAGCGGAGGCCCAAAGCTCAGCCCAGTGCCACACTGGAAGGCTTCTACAAGCTGCTGGGCAGGACTCCAAAGGAG
Seq C2 exon
GGTGACCTGATTTCAGTGGCCAAGCAAAGTGGCCTGCCAGTCAGAACAGTGCAGACCTGGTTCCGGCACCGGCGGGCCCAGGACCATCCCAGACTTACAAAGAGGTTCTGTGAGGCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000406-'0-1,'0-0,1-1=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.070 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(46.4=65.0)
C2:
PF0004624=Homeobox=PD(50.0=70.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACTGGCTGCCACCTGGAG
R:
CGCCTCACAGAACCTCTTTGT
Band lengths:
251-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]