RnoEX0020314 @ rn6
Exon Skipping
Gene
ENSRNOG00000001072 | Cers4
Description
ceramide synthase 4 [Source:RGD Symbol;Acc:1309303]
Coordinates
chr12:4447101-4450137:-
Coord C1 exon
chr12:4449964-4450137
Coord A exon
chr12:4448685-4448802
Coord C2 exon
chr12:4447101-4447219
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCCCTTACACTCAGATT
3' ss Score
8.17
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CATGCTGTTCAGCTTGAATGAGTGGCTGTGGCAGGAGACATACTGGTTACCACCCAATGTCACATGGGCACAGCTGGAGGACCGTGATGGCCTGGTGTTCGCCCACCCTCACCACGTGCTTGCTGCCTTGCCAATTGCACTGGTCCTGGTGGCTATGCGTATCATCTTTGAGAG
Seq A exon
ATTCGTGGCCTTGCCCCTGAGCCGGTGGATGGGTGTGCAGGATCCAATCAGGAGAAAGATAAAGCCCAACCCAGTGCTGGAGAAATACTTCCTCAGGATGAAGCAGAGACCAGTGGAG
Seq C2 exon
ACCCAGATGGTCCTCCTGGCTTCCCAGTGTGGCCTCACGTTGCGGCAGATTCAACGCTGGTTCAGGAGACGTCGGAACCAGGATCGGCCTTGCCTGTCCAAGAAATTCTGTGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001072-'8-10,'8-8,9-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0210110=Ocular_alb=PU(66.1=67.2)
A:
PF0210110=Ocular_alb=PD(32.2=47.5)
C2:
PF0004624=Homeobox=PD(60.4=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTTGAATGAGTGGCTGTGG
R:
CTGGTTCCGACGTCTCCTGAA
Band lengths:
245-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]