BtaEX0008660 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003434 | CERS4
Description
Bos taurus ceramide synthase 4 (CERS4), mRNA. [Source:RefSeq mRNA;Acc:NM_001015520]
Coordinates
chr7:18154985-18159056:+
Coord C1 exon
chr7:18154985-18155158
Coord A exon
chr7:18158011-18158128
Coord C2 exon
chr7:18158938-18159056
Length
118 bp
Sequences
Splice sites
3' ss Seq
TTTGTCTCCCCTGCACCCAGATT
3' ss Score
8.08
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
Exon sequences
Seq C1 exon
GATGTGGTCCAGCCTGAACGACTGGCTGTGGAACGAGAGGTTGTGGCTCCCCGCCAACATCTCATGGGCTCAACTGGAGGACCACGATGGCCTGGTCTTCCCCCACCCCCAGGACACATTGATGGCTGTGCCCCTGGCGCTGGCCCTGGTGGTCGTTCGCTTCACCTTCGAGAG
Seq A exon
ATTCGTCGCCCTGCCCCTGAGCCGGTGGCTGGGCGTGCGGAACCAGATCAGGAGGCCAGCGGACCCCAATGCCACGCTGGAGAAGCATTACCTAATGAAAGGGCGGGAGCCCACGGAG
Seq C2 exon
TCCCAGATGAACCTCCTGGCCACGCAGTGCGGCCTCACGCTGCGGCAGACTCAGTGCTGGTTCCGGAGACGCCGGAACCAGGACCGGCCCTGCCTGACCAAGAAGTTCTGTGAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003434_MULTIEX1-3/10=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(38.0=47.5)
C2:
PF0004624=Homeobox=PD(58.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGGAACGAGAGGTTGTGG
R:
GAACTTCTTGGTCAGGCAGGG
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development