MmuEX0026163 @ mm9
Exon Skipping
Gene
ENSMUSG00000008206 | Lass4
Description
LAG1 homolog, ceramide synthase 4 [Source:MGI Symbol;Acc:MGI:1914510]
Coordinates
chr8:4515555-4518358:+
Coord C1 exon
chr8:4515555-4515728
Coord A exon
chr8:4516873-4516990
Coord C2 exon
chr8:4518240-4518358
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTGTCTCTCTCACACTCAGATT
3' ss Score
9.71
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CATGTCGTTCAGCTTGAGTGAGTGGCTGTGGCAGGAGACATACTGGTTACCACCCAATGTCACATGGGCAGAGCTGGAGGACCGTGATGGCCTGGTGTTCGCCCACCCTCACCACGTGCTTGCTGCCTTCCCAGTGGCTCTGGTCCTGGTGGCTGTGCGAATTGTCTTTGAGAG
Seq A exon
ATTTGTGGCCTTGCCCCTGAGCCGGTGGATGGGTGTGCAGGATCCAATCAGGAGAAAGATAAAGCCCAACCCGGTGCTGGAGAAGTACTTCCTCAGGATGAAGCAGTGTCCAGAGGAG
Seq C2 exon
ACACAGATGGTCCTGCTGGCTTCCCAGTGTGGCCTCACGCTTCGGCAGACTCAACGCTGGTTCAGGAGACGTCGGAACCAGGATCGGCCTTCCTTATCCAAGAAATTCTGTGAAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008206_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(35.4=42.5)
C2:
PF0004624=Homeobox=PD(60.4=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCAGGAGACATACTGGT
R:
TAAGGAAGGCCGATCCTGGTT
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: