DreEX0021066 @ danRer10
Exon Skipping
Gene
ENSDARG00000031387 | cers4a
Description
ceramide synthase 4a [Source:ZFIN;Acc:ZDB-GENE-020808-1]
Coordinates
chr22:4327428-4335225:+
Coord C1 exon
chr22:4327428-4327607
Coord A exon
chr22:4332274-4332394
Coord C2 exon
chr22:4335107-4335225
Length
121 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGTCTGTGTAGGGT
3' ss Score
9.88
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
ATTGGAGGATAACATAAACCGTTGGTTATGGCGGGAAGACTTCTGGCTTCCTCCTGGCGTTACGTGGAAAGACATCGCAGAGGGAACGTCTGACGGAAGTCGGCATCCCGTACCGCGGGATCTGCTCATCTCATTCCCATTGGCCCTGGGGTTCATCGCCCTGCGTTTTGTATTCGAAAG
Seq A exon
GGTGGTGGCTCTGCCTCTGAGCCGCCGGCTGGGTGTTCGTGACAGGGTTCGGCTTCACATCACACCGATCCCCAAACTGGAGGCGTTCTACCTGCAGAAGAAGAAGACTGAGCCGTCACAG
Seq C2 exon
GAGGATCTTCAAGCTCTGGTGAAGCTCTGTGGTCTCAGCGAGCGTCAGATTCAGTCATGGCTCCGGCGCCGCAGGATTCAGGACCGGCCCGCAAACTCCCGCAAGTTCAGCGAAGCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031387-'4-7,'4-3,5-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(47.5=68.3)
C2:
PF0004624=Homeobox=PD(49.2=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTTCTGGCTTCCTCCTGG
R:
CTGAACTTGCGGGAGTTTGCG
Band lengths:
254-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]