GgaEX6027642 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C668]
Coordinates
chr28:115390-130611:-
Coord C1 exon
chr28:130438-130611
Coord A exon
chr28:118801-118918
Coord C2 exon
chr28:115390-115508
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTATCTTTTCTCTTGCAGAGC
3' ss Score
12.29
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGGCACACTCTTTGAATGAATGGCTATGGCAGCACGAGTTCTGGCTCCCCCCAGGAATTACATGGGAGGACATGAAGGAGTCTGAAGACACCCATTATCCAAAGCCTCGTGATCTCCTGCTCAGCATCCCTTTTGCCTTAATCCTGGTTGTCATTCGATGCATCTTTGAAAG
Seq A exon
AGCCATAGCCCTGCCTCTCAGTGCCAAACTGGGTGTGAAGGACAAGCTGAGACCTAAAGCTCAGCCCATCTCCATTCTGGAAACATTCTACACTGTGAATTGTAAGAACCCTAAAGAG
Seq C2 exon
GGTGAGCTGATCAGTTTAGCCAAGCAATGTGACCTGCCAGTGAGAAAAGTGGAGAGGTGGTTTCGGCGCCGGAGGAACACCGACCGACCGAGCCTGTCGAAGAAGTTCTGCGAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'15-15,'15-13,18-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(45.6=65.0)
C2:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGCAGCACGAGTTCTGG
R:
GAACTTCTTCGACAGGCTCGG
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]