GgaEX6027642 @ galGal3
Exon Skipping
Gene
ENSGALG00000000307 | E1C668_CHICK
Description
NA
Coordinates
chr28:83783-99488:-
Coord C1 exon
chr28:99315-99488
Coord A exon
chr28:87678-87795
Coord C2 exon
chr28:83783-83901
Length
118 bp
Sequences
Splice sites
3' ss Seq
CTTTATCTTTTCTCTTGCAGAGC
3' ss Score
12.29
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GATGGCACACTCTTTGAATGAATGGCTATGGCAGCACGAGTTCTGGCTCCCCCCAGGAATTACATGGGAGGACATGAAGGAGTCTGAAGACACCCATTATCCAAAGCCTCGTGATCTCCTGCTCAGCATCCCTTTTGCCTTAATCCTGGTTGTCATTCGATGCATCTTTGAAAG
Seq A exon
AGCCATAGCCCTGCCTCTCAGTGCCAAACTGGGTGTGAAGGACAAGCTGAGACCTAAAGCTCAGCCCATCTCCATTCTGGAAACATTCTACACTGTGAATTGTAAGAACCCTAAAGAG
Seq C2 exon
GGTGAGCTGATCAGTTTAGCCAAGCAATGTGACCTGCCAGTGAGAAAAGTGGAGAGGTGGTTTCGGCGCCGGAGGAACACCGACCGACCGAGCCTGTCGAAGAAGTTCTGCGAGGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000307-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.034 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(45.6=65.0)
C2:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTATGGCAGCACGAGTTCTGG
R:
GAACTTCTTCGACAGGCTCGG
Band lengths:
257-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]