RnoEX6034048 @ rn6
Exon Skipping
Gene
ENSRNOG00000052990 | Cers5
Description
ceramide synthase 5 [Source:RGD Symbol;Acc:1311597]
Coordinates
chr7:141398347-141424343:-
Coord C1 exon
chr7:141424011-141424343
Coord A exon
chr7:141402459-141402564
Coord C2 exon
chr7:141398347-141398477
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGCGTTTTCTCTGTTACAGATT
3' ss Score
11.67
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GGGCGTCTGGGAGGACCCGAGGACGGAAGAGGGTGGCCGTAGGCCGGGCCCCGCCCCGGGGCCGCCTTCCAGCGGGTTCTTTTTGCCTTGGCTGCCTCGGAGGCTGTGGCGGCAGTGGCCGCCGGGCGCGCGTAAGATGGCGACTGCGGCGGCGGAAGCCCTGGGCCTCCTGTGGGGCTGGCTGTGGAGCGGGCGCTTCTGGCTGCCTCAGAACGTGAGCTGGGCGGACCTGGAGGGCCCGGGCGACGGCTACGGCTACCCGCGCGCCCGGCACGTGCTGTCGGTGTTCCCGCTGGCAGCAGGTCTCTTCTCCGTGAGGATGCTGTTCGAGCG
Seq A exon
ATTTATTGCTAAACCCTGTGCACTCCGTATTGGCATTGAAGACAGTGCTGTCTACCAGGTGGAATCCAATGTCACCCTTGAGAAGGTGTTCACATCTATCTCTAAG
Seq C2 exon
TATCCTGATGAGAAAAGGCTGAAGGGCCTATCAAAGCAACTGGACTGGGATGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGAAATCAGGACAAGCCTCCAACGCTCACTAAGTTCTGTGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000052990-'1-6,'1-2,6-6=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(35.2=52.8)
C2:
PF0004624=Homeobox=PD(61.1=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
ENSRNOT00000084292fB2968
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGCTGCCTCAGAACG
R:
AACTTAGTGAGCGTTGGAGGC
Band lengths:
257-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]