MmuEX6056462 @ mm10
Exon Skipping
Gene
ENSMUSG00000023021 | Cers5
Description
ceramide synthase 5 [Source:MGI Symbol;Acc:MGI:1919199]
Coordinates
chr15:99747037-99772092:-
Coord C1 exon
chr15:99771888-99772092
Coord A exon
chr15:99751236-99751341
Coord C2 exon
chr15:99747037-99747167
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGGATTTTCTTTGTTACAGATT
3' ss Score
8.84
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCGGGGGAGCCGGGGAGCCCGGGCCGCGGCGGGGATGCTCGGAGCCCGGCGACGCGCCCCTGGAGCCTGCGTGCGCGCAGACCGCGCGAGTCTAGGGTGTGGGCGAGTGAGAGAGAATCGAGGGGAGTGCTGGGCCTCAGAAGTGCAGATCACAGAGTCGCATGGAGCTCTCGAAGGCTGCCTCCCAATCTCCAGGAACCCAAGA
Seq A exon
ATTTATTGCCAAGCCCTGTGCACTCCGTGTTGGCATTAAAGACAGTCCTGTCAATAAGGTGGAACCCAATGACACCCTTGAGAAGGTGTTCGTATCTGTTACTAAG
Seq C2 exon
TATCCTGATGAGAAAAGGTTGAAGGGCCTATCAAAGCAACTGGACTGGAGTGTTCGAAAAATCCAATGCTGGTTTCGCCATCGGAGGAATCAGGACAAGCCTCCAACGCTCACGAAATTCTGTGAAAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023021-'2-9,'2-6,5-9
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.004 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(30.0=41.7)
C2:
PF0004624=Homeobox=PD(66.0=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCTAGGGTGTGGGCGAG
R:
CACAGAATTTCGTGAGCGTTGG
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types