DreEX0021072 @ danRer10
Exon Skipping
Gene
ENSDARG00000002365 | cers5
Description
ceramide synthase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-1740]
Coordinates
chr22:5743517-5792301:-
Coord C1 exon
chr22:5791635-5792301
Coord A exon
chr22:5747245-5747350
Coord C2 exon
chr22:5743517-5743647
Length
106 bp
Sequences
Splice sites
3' ss Seq
TCTGTTATTTCCTCCTGAAGGTT
3' ss Score
8.55
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
TATTTACAAATCATAAAATGACTCAAACAGCACATTTTCTAAATAATTAGCCAAAGAATGGCATTGTGTTTAAAACTACGCCTCTTGACTATTTCGCGTGTGTACCACCAAGCACTCTTGTCTGTGTCGTAATTTTGAGGTGTACGTAATGCGCATCGCTCACTTCCTCATGCAGCCTCATCACGGGTGTGGAAACACCTTCAACACGTCCACATTCAGAGGAAGAGAGAGAAAGAGGGAGAAGCGGGCGGTCAGTCGTTTGCCACCCGCGTATTTTTCTTTCTTCGCGTCCTCTTCTCTCCCTGATCTGTAGTTTTTCTTCTAAACATGGCTGCGCTCTCAGCCTGGTTCTGGAACGAGCGCTTTTGGCTTCCGCACAATGTCACTTGGGCGGATCTGGCCGACCCAGCGCCCGGGGTGGAGTACCCGAAAGCCGGCCACTTGCTCTCCGCGCTGCCGCTGGCCTTGGGGATCTTCGCGGTGCGGATATTTTTCGAGAG
Seq A exon
GTTTATCGCAGGTCCGTGTGCCTCCATGCTTCAGATCCAGACGGAGTTGAGTAGGAGAGCTCAGCCCAACGCCGTCCTGGAGAAAGTGTTTACATCCATCACAAAG
Seq C2 exon
TCTCCAGACTCCAGGCATTCAGAAGGCCTGTCTAAACAGCTGGACTGGGATGTGCGAAAAGTCCAGCGATGGTTTCGACACAGAAGAAACCAAGACAAACCCAGCACAAGAACCAAATTCTGCGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000002365-'0-4,'0-2,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(31.4=44.4)
C2:
PF0004624=Homeobox=PD(64.7=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
ENSDART00000011076fB1877
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAAACATGGCTGCGCTCTCAG
R:
ATCGCTGGACTTTTCGCACAT
Band lengths:
248-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]