DreEX0021087 @ danRer10
Exon Skipping
Gene
ENSDARG00000053583 | cers6
Description
ceramide synthase 6 [Source:ZFIN;Acc:ZDB-GENE-070522-1]
Coordinates
chr9:49217672-49239755:-
Coord C1 exon
chr9:49239435-49239755
Coord A exon
chr9:49224052-49224157
Coord C2 exon
chr9:49217672-49217802
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTGTTTTTTGGTTGTTGTAGGTT
3' ss Score
9.52
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CAGAAACGGGCGGTGCATCATCGCCAACATCATCATCATCATCACTACCATCACCCTCACACTGGACCTGCAAAAGATCCAGCCGTGAATAAAAGACTGCACCATTGGTCTCCACATTATTAGCACCAACACACCATCGGATCCGCTGGAAATGGCAGGCATTCTGGCGTGGTTCTGGAACGAGCGCTTCTGGCTCCCGCATAATGTAACCTGGGCTGACTTGAAAAACACAGACGATTCAACCTTTCCCCAAGCCGAGGATCTCTATCTGGCGTGTCCTTTAGCATTCTGCATGTTTATGATCCGACTGGTCTTTGAGAG
Seq A exon
GTTTATTGCGAGGCCGTGTGCGCTGGGTTTGAAAATCCAGGCCAATGGACCGCAGAAAGCTCAGCCCAATGCTATTCTGGAGAAGGTCTTCACTGCCATCACCAAG
Seq C2 exon
CACCCTGATGAGAAGCGGTTAGAGGGTTTGTCTAAGCAGCTGGACTGGGACGTGAGGACAATCCAACGCTGGTTCAGACAGAGACGCAACCAGGAGAAACCCAGCACACTGGCACGCTTCTGCGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000053583_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(32.7=47.2)
C2:
PF0004624=Homeobox=PD(63.5=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAATGGCAGGCATTCTGG
R:
GTTGGATTGTCCTCACGTCCC
Band lengths:
242-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]