RnoEX0020327 @ rn6
Exon Skipping
Gene
ENSRNOG00000024595 | Cers6
Description
ceramide synthase 6 [Source:RGD Symbol;Acc:1561599]
Coordinates
chr3:55094637-55165724:+
Coord C1 exon
chr3:55094637-55094940
Coord A exon
chr3:55157605-55157710
Coord C2 exon
chr3:55165594-55165724
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTCTCTTTTTAAACCTTTAGATT
3' ss Score
9.12
5' ss Seq
AAGGTATGA
5' ss Score
9.11
Exon sequences
Seq C1 exon
CGCGGAGGAGGCGGCGGCAGGCGGAGCGGCAGCGGCACAGGCTCCCGGCCAACCCAGCGCGCATCCCCAGTGCCCTGCGCTGCAGAGAGCTCGGAGGAACGCGGGAGCAGCGACACAGGAGTGGACAAAGCAAGATGGCAGGGATCTTAGCCTGGTTCTGGAATGAGCGGTTTTGGCTTCCGCACAATGTCACCTGGGCAGACCTGAAGAACACGGAGGAAGCCACCTTCCCGCAGGCGGAGGACCTCTACCTCGCCTTCCCCTTGGCCTTCTGCATCTTCATGGTGCGGCTCATCTTCGAGAG
Seq A exon
ATTCATAGCCAAACCATGTGCCGTAGCCCTCAACATCCAAGCCAATGGACCACAAATTGCCCAGCCAAATGCCATTCTGGAAAAGGTTTTCACCGCCATAACAAAG
Seq C2 exon
CATCCTGATGAGAAGAGATTGGAAGGGCTCTCCAAGCAGCTGGACTGGGATGTTCGGAGCATTCAACGCTGGTTTCGACAAAGGCGTAACCAGGAGAAACCCAGCACTCTGACCAGGTTCTGCGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000024595-'0-3,'0-0,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(30.0=41.7)
C2:
PF0004624=Homeobox=PD(66.0=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAATGAGCGGTTTTGGCTT
R:
CTGGGTTTCTCCTGGTTACGC
Band lengths:
250-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]