BtaEX6009310 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044179 | CERS6
Description
Bos taurus ceramide synthase 6 (CERS6), mRNA. [Source:RefSeq mRNA;Acc:NM_001193132]
Coordinates
chr2:27641525-27758923:-
Coord C1 exon
chr2:27758754-27758923
Coord A exon
chr2:27653077-27653182
Coord C2 exon
chr2:27641525-27641655
Length
106 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTTTTTTTCAGATT
3' ss Score
12.99
5' ss Seq
AAGGTATGC
5' ss Score
9.55
Exon sequences
Seq C1 exon
ATGGCAGGAATCTTAGCCTGGTTTTGGAACGAGAGGTTTTGGCTCCCGCACAATGTCACCTGGGCGGACCTGAAGAACACGGAGGAAGCCACCTTCCCGCAGGCTGAGGACCTCTATCTCGCCTTCCCCTTGGCCTTCTGCATGTTAATGGTACGGCTCATCTTCGAGAG
Seq A exon
ATTTGTAGCCAAACCATGTGCCATAGCCCTCAACATTCAGGCCAATGGACCACAGATTGCCCAGCCAAATGCCATCCTGGAAAAGGTCTTCACTGCAATTACAAAG
Seq C2 exon
CATCCTGATGAAAAGAGATTGGAGGGCCTCTCCAAGCAGCTGGACTGGGATGTTCGCAGCATTCAACGCTGGTTCCGACAAAGACGCAACCAGGAGAAACCAAGCACGCTGAAGAGGTTCTGCGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044179-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(30.0=41.7)
C2:
PF0004624=Homeobox=PD(66.0=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGAGAGGTTTTGGCTCCC
R:
TTGGTTTCTCCTGGTTGCGTC
Band lengths:
247-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]