MmuEX6101831 @ mm9
Exon Skipping
Gene
ENSMUSG00000027035 | Lass6
Description
LAG1 homolog, ceramide synthase 6 [Source:MGI Symbol;Acc:MGI:2442564]
Coordinates
chr2:68699498-68785414:+
Coord C1 exon
chr2:68699498-68699862
Coord A exon
chr2:68772572-68772677
Coord C2 exon
chr2:68785284-68785414
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTTTAAACCTTTAGATT
3' ss Score
9.35
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
TTTTCCCAGCGCGGCCAGAGGGAGGAGTGGAGCGGATCGCGGAGCCTGAGAGTGCAGCGGCCACAGAGGAGGCGGCGGCAGGCGGAGCGGCAGCGGCAAAGGCTCCCGGCCAACCCAGCGCGCATCCCCAGTGCCCTGAGCTGCAGAGAGCTCGGAGGAGCGCGGGAGCAGCGACACCGGAGTGGACAAAGCAAGATGGCAGGGATCTTAGCCTGGTTCTGGAACGAGCGGTTTTGGCTTCCGCACAATGTCACCTGGGCAGACCTGAAGAACACGGAGGAAGCCACCTTTCCGCAGGCGGAGGACCTCTACCTTGCCTTCCCCTTGGCCTTCTGCATCTTCATGGTGCGGCTCATCTTCGAGAG
Seq A exon
ATTCATAGCCAAACCATGTGCCATAGCCCTCAACATCCAAGCCAATGGACCACAAACTGCCCAGCCAAATGCCATTCTGGAAAAGGTTTTCACTGCTATAACAAAG
Seq C2 exon
CATCCTGATGAAAAGAGATTAGAAGGGCTCTCCAAGCAGCTGGACTGGGATGTTCGGAGCATTCAACGCTGGTTTCGACAAAGACGCAACCAGGAGAAACCCAGCACTCTGACCAGGTTCTGTGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027035-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(34.0=50.0)
C2:
PF0004624=Homeobox=PD(62.3=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAAAGCAAGATGGCAGGGA
R:
AGCGTTGAATGCTCCGAACAT
Band lengths:
251-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: