GgaEX6042473 @ galGal3
Exon Skipping
Gene
ENSGALG00000010902 | E1C4X9_CHICK
Description
NA
Coordinates
chr7:20486307-20522309:-
Coord C1 exon
chr7:20522140-20522309
Coord A exon
chr7:20487837-20487942
Coord C2 exon
chr7:20486307-20486437
Length
106 bp
Sequences
Splice sites
3' ss Seq
CACTCTTCTGTTTCTTGTAGGTT
3' ss Score
11.14
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
ATGGCAGGGATCCTCGCCTGGTTCTGGAACGAGCGGTTCTGGCTGCCGCACAACGTCACCTGGGCCGACCTGCAGAGCACGGAGGAAGCCTCTTTCCCGCAGGCGGAGGACCTCTACCTCGCCTTCCCTCTGGCCTTTTGCATCTTTATGATCCGCCTGCTCTTCGAAAG
Seq A exon
GTTCATTGCTAAACCATGTGCCTTAGGCCTTAAAGTCCAAGCCAACGGACCACAGAAAGCTCAACCTAATGCTATCTTGGAAAAAGTTTTCACAGCCATTACAAAG
Seq C2 exon
CATCCGGATGAGAAGAGGCTGGAGGGCCTCTCCAAGCAGCTGGACTGGGATGTACGCAGCATTCAGCGTTGGTTTCGACAAAGACGCAACCAGGAGAAGCCAAGTACTCTTACAAAGTTCTGTGAGAGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010902-'0-2,'0-1,3-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(32.7=47.2)
C2:
PF0004624=Homeobox=PD(63.5=75.0),PF0379811=TRAM_LAG1_CLN8=PU(2.6=11.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATCCTCGCCTGGTTCTGGAA
R:
CGTCTTTGTCGAAACCAACGC
Band lengths:
248-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]