DreEX6039041 @ danRer10
Exon Skipping
Gene
ENSDARG00000058992 | cers2b
Description
ceramide synthase 2b [Source:ZFIN;Acc:ZDB-GENE-110408-40]
Coordinates
chr16:1360026-1362519:+
Coord C1 exon
chr16:1360026-1360198
Coord A exon
chr16:1362205-1362322
Coord C2 exon
chr16:1362401-1362519
Length
118 bp
Sequences
Splice sites
3' ss Seq
AAATCTGCTTGTTTGCTCAGATA
3' ss Score
5.71
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
ATGCTGGCGGGTCTGAGCGAGCTGTTCTGGCAGGAGCGTCTCTGGTTCCCCGAGGGTCTGGGATGGGCTGATCTGGAGGACCGGGACGGACGGGTCTACGCTAAAGCTCGCGACCTGTGGGTGGCGCTGCCCATCGCTGTGCTGTTTCTGCTCATACGACAGCTCTTCGAGAA
Seq A exon
ATATGTTGCTACACCGCTGGCCTCTCTGCTGGGCCTGAAGGAAACGGTGAGACGGAGAGTTGCACACAATCCAGCACTGGAGTCCTACTATTGCAACACAAGCAAAAACCCCACACAG
Seq C2 exon
AGTTCAGTGGAGAAGCTGAGCAAGCAGACGGGATGGACAGAGCGGCAGGTCCAGCGCTGGTTCAGACGCCGCAGAAATCAAGACAGACCAAACCTGCTGAAGAAGTTCTGCGAGGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000058992-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.075
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(38.0=47.5)
C2:
PF0004624=Homeobox=PD(58.0=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGAGCGAGCTGTTCTGG
R:
TTGATTTCTGCGGCGTCTGAA
Band lengths:
244-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]