RnoEX0020302 @ rn6
Exon Skipping
Gene
ENSRNOG00000021138 | Cers2
Description
ceramide synthase 2 [Source:RGD Symbol;Acc:1310059]
Coordinates
chr2:196492393-196493387:+
Coord C1 exon
chr2:196492393-196492566
Coord A exon
chr2:196492969-196493086
Coord C2 exon
chr2:196493269-196493387
Length
118 bp
Sequences
Splice sites
3' ss Seq
TCTCTCTGTCCCTTACCCAGTTA
3' ss Score
7.49
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
GATGCTCCAGACCTTGTATGACTACTTCTGGTGGGAACGACTATGGCTGCCTGTGAACTTAACCTGGGCTGATCTAGAAGACAAAGATGGACGTGTCTATGCCAAAGCCTCAGACCTCTACATCACACTACCCCTGGCCCTGCTCTTTCTCATCATTCGATACTTCTTTGAGCT
Seq A exon
TTATGTGGCTACACCCCTGGCTGCCCTCCTGAATGTTAAGGAGAAAACCCGACTGCGGGCACCTCCCAATGCCACCTTAGAGCATTTCTACCTGACCGTCGGCAAGCAGCCCAAGCAG
Seq C2 exon
GTGGAGGTAGACCTTTTGTCTCGGCAGAGTGGGCTCTCTGGACGCCAGGTAGAACGTTGGTTCCGCCGCCGCCGCAACCAGGACAGGCCCAGTCTTCTCAAGAAGTTCCGAGAAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021138-'11-6,'11-5,14-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0004624=Homeobox=PU(45.6=65.0)
C2:
PF0004624=Homeobox=PD(50.9=72.5),PF0379811=TRAM_LAG1_CLN8=PU(2.6=12.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAACGACTATGGCTGCCTGTG
R:
TCTTGAGAAGACTGGGCCTGT
Band lengths:
243-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]