RnoEX0021499 @ rn6
Exon Skipping
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122142000-122151609:+
Coord C1 exon
chr8:122142000-122142063
Coord A exon
chr8:122142547-122142549
Coord C2 exon
chr8:122151446-122151609
Length
3 bp
Sequences
Splice sites
3' ss Seq
AAATGAATAGAATAGAGTAGAGA
3' ss Score
-14.24
5' ss Seq
AGAGTAGAA
5' ss Score
-8.36
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGATTGTGTGAAATTTTCACAAGAATGTTTGCAGATCCTCATGGCAAG
Seq A exon
AGA
Seq C2 exon
GTGTTCAGCATGTTTTTGGAGACCCTAGTAGATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTTTGTTCTGCTGACACAACTGCTGAAAAAAATGGGTGCTGACTTGCTTGGGTCTGTTCAGGCAAAGGTTCAGAAAGCCCTTGATGTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161-MICROEX1
Average complexity
MIC-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100)
A:
NO
C2:
PF123483=CLASP_N=FE(23.8=100)
Main Inclusion Isoform:
ENSRNOT00000091980fB3154
Other Inclusion Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGATCCTCATGGCAAG
R:
TGTCAGCAGAACAAACAACCA
Band lengths:
108-111
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]