RnoINT0036797 @ rn6
Intron Retention
Gene
ENSRNOG00000009161 | Clasp2
Description
cytoplasmic linker associated protein 2 [Source:RGD Symbol;Acc:619789]
Coordinates
chr8:122142000-122151609:+
Coord C1 exon
chr8:122142000-122142063
Coord A exon
chr8:122142064-122151445
Coord C2 exon
chr8:122151446-122151609
Length
9382 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGT
5' ss Score
9.79
3' ss Seq
CTCCCCATTATCAACTACAGGTG
3' ss Score
7.49
Exon sequences
Seq C1 exon
TCGAGTTGAACTGAAAAGATTGTGTGAAATTTTCACAAGAATGTTTGCAGATCCTCATGGCAAG
Seq A exon
GTATGTTTTAGTATTCAAGATGATTTATTCCTATACGGTATAAAAAAGAAGAAGTATAGTAGTAAATAACTATAAGCCGTTAGTAGTGATGTTTTCCAACATAATTTCAGTTGTTTCATGTCATGCATTATTTAGAAATTCTTTTTATTCACTCATTCCGGCTTCTTTAAAGGAAGACTGAGGGGTGCAGTTAGAATCTTGACTCTCAGGATGTAGACCAAGAATGCTGTGCAGGCTGGATGGTCGTCAGTAGAATCTGAAGTTTTACCACTAGAAGCAGAAGTTTTAAATGTCAGCCGTGGGGCCTGTCAGTAGTGGCACATGCCTTTAATCCCAGCACTCCAGAGGTAGTGGCAGGCAGATCTCTGAGTTTGAGGCCAGCCTAGTTTACAGAGTAAGTTCAGGACAGCCAGGATTACACAGAGAAACCCTGTCTCAAAAAAACAAAACTCATTAAATAAGTAAATGAATAGAATAGAGTAGAGAGTAGAATAGAGTAGAGTAGAGTAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACAGAACGAAATGAAACGAAACGAAACGAAACGAAATGAAATGTCAGCTGTGGGGCTGAAGCGGCAGCTTGGTGGGTAAAAGCGCTGGCTGCTCTTATAAGGGACTGGAAGAGCAGCCAGTGCTTTGGTGGTGGTGGTAGTAGTGTTTTGCTGTTTGTTTCTTTCTTGAGACAGGATCTCACTGTGTAGCCTTGGCTGGCCTCAAACTCAGAGAGATTCACCCTTGCTCCACCTGTAGGGCTGGGAAGATAGACAGCGCCAGATTCAGCTTATAGACAGTCAGTGCTCTTAAACTACTGAGCCATCTCTCCAGGCCCAGGAACCTGTATTATTTAGATCATCAAGGTTAACTTACTGAACATTAGGACTGCTGAGGGGTAATGTACCAGCACCCTCTAGAGAGCCCTCACCTGCTCTGCTCTCTCTACATCTGACCCATGGTTGAGCCTCATAGTCCTTCTCATCTCGGTTCTTACTCAGTTCTTCACTGTAACTGGATCTAACACTCTGTCTCCTAAGACCCCTGCCACATTTCTCTCCTCGCCTTTGTCTTTTGCATGGATGCCACCCCTTACTCAGGAAGCATATTTCCTGTCTCTGACCATCTTACTTTTTGCTGAGATAGAAGGAGCTCTCACCTTGAAACGCGTGTTCACTACAGACATGTAGCGCCCCACCATCTTTTGTGATATTGTACTCATAGACATCTCAACCCCTACTCTTGTAACCCTTTAATGCAGTTCTTCATGTTGTGCTGATCCCAACCATGAAGTTATTTCATTACTTTGTCATAACTGTCATTTTGCTAATTATGAATCGTAATGTGTTTCCTAATGAATCGTAATGAATCTGTGTTTCCTAATAGTCTTAAACAACCCCTGTGAAAGGATTCTCTCTCCCCAAAGGGTCCTGTCCATAGGTTGAGAAAGGCTGAAAAACAAAACAACACACACAAAAAAAAAAAAAAAAAAGAGAAAGGCTGCTATGAGGTCTCATCTACTTGGCTTTCAGGAGGTTCTTACAAGTTCCAGTTGGCCGCTTGACATTTTTGTTTTACTAAGCTTCATTTTGGAACTGTTCTGCACTTGGCGGTACTTTTTCTACCATTTAAGAAACATGGCTGTGGGCTGGAGAGGTGGCTCTGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAGTCCCTAACAACCGCATGGTGGCTCACAACCATCTGTAATGGGATCCGATGCCCTCTTCTGGTGTGTGTGAAGACATTTACAGTGTACAGAAAAGAATTCGTTTTTAAAAAAGAAGCAAACAAACGTAGGTAAGATAGGGAAAAATAGTATTTTCTTCTATTCTGAATCCCTCCTTCCCTTGTGCCCGTTTCTTCTGCTCTGGTTCTCACACCCCGTCTCTGCCTGTTTTACTGATCCTGTGGTGTAGAACGCTGTACCGAAATTCTCCTTCCACGTCATACTGTTTATTATTTGAAGTGTGTGTGTGTTGTTGTGTAGACTACCTGACCTGGAATCTTCTATATAAATCAAGCTGCCTTTGAACTCAGAACTCACAGAGATCCCCCTGCCTTTGCCTCTTGGGTATTGAGATTAAAGGCATGGGCCACTACATAATGCCTAATGTAATACGTTAGTAACTGACTGAAATTGTATTACTAAAAGTGTAGTGTAGTGGAAATGGACATACTTATAGATGCAAAGGTTTGCAAATATTTAAAATATTTAAAACACAGATGCAGAAGTCTAAGATACAGGGGCTGGCTCTGTCTTTAGCCTTTCCCATTCTTCCTCCTGTGTTTCCCACCATTTGACTACTCAACTTAGGAGTTTGCATTCCTGTAACAATACCACTCCTTTTGGTTCTGCCTCTGAATGTCCGTCCACTCTCACTGCTAATTAAGGAACAATCATCTTTTGTCAATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCATGTATTTTCTTGTGTACAGGTACTTACGGCTGTGTTCGTGCAGAGATACTGGAAGAAGGTATCTGGTGTCCCCATTTGTGTACGCCTTGTTTCTTTAAAGTAGAGCCTCTTCCTAAATCTGTAGTTTGCCTGTTTCAGCTAGGCTGGTAGCCAGTAAGTCCTGAAGATTCTCTGTCTCTTTTTCTGACAGCAGTGAGATTGCAGGTACAAGCAAGACCGCAGCTTGCTCTGTGAGTGCTGGGATCAGAACTCAGGTCCTCCTAGGGAGCCACTCGCTGACCCCTGAGTTTTTATTTTTACTGCTGTGAATCTATTTTATGCCTCCTCAACTCCCTAATATATGTGATAACATGTACTGAAACTAATTTTACCATGTGGTTTCAGCATTTGCCTTTCATAAGGAATTCTTTAATTCCACCCTGTTACTGCTCTACTAGGACCCAGTTGAATGTTTTCAGGTCATCATCTCTGGTTCTGACAAGCATTGTAGCCAGGTCAGGGAGTGAGCTGCTTAACAGTCTTAGAGCAGGAGATGGTAGTACTCTTACCCACAAAAGGTAAAGTGTGATGGGAACATGTGTTTTTACTTGCGTAGAATTACAAAACTTCACAGAAGTCATGTAACTTGTCAAGGTACAGGGAGAAGATGAGAAAATAGTTTTAGATACTATGGTTTGGAACCAAATTTTGACACTGTTGATAAATGGAAATGAGGTTCTGTTAACCTTTTTTTTTTCTACAAATTGATCCACAAGGAGAGAGGATGGTGCAACAAAACAGTATTCGTACTGGGCTGGGTCTGGTGGTCCAGGCCTTTAATCCTGCCACCTCCGAGAGTTCGAGGACAGGCTGGTCTACATGGTGACTTCCAGGACAGTGAGGCTACATAATGAGACCTTGTCAAATAAACAAATAAGCAAACAAAGAAATAAGAAAGATTTGGGAACAACAGAAACAAAGAACTCCTCCCCCTTTTACATTTCCTTTACAAGGAAATAAAGGAAACATGCAGAGAAACCCTGTGCCTTTCTCCTGTGTTGTTCATGTAACTCTTGTTTTAAAAAACTTTGAAAAACATTTGTTACTTTTATTTTCTTCAGTGTTTTTCTCTCCCATACAGGAACTTTGCATTGATGGCGACTAATTTGTGTGTTTTTCTTTTTTTCTTTTTTCCTTTTTGCATGCTGTCCCCTGTGTTGGAACTCTCAATAGAGAGTAAGTTGGTTCAATATTTGTTGAAAAGCTAACTTTACTGCATGACTGTGGAATTAACCCATTTTCTCTGTTTTCTCTCCTGAAGAGTCCGTGCAGTGTTGGATCCTTTGCAATCCACGAAATGCTATTCGCAGTTCCGCAGGCTGTCGTTCTATTTGGAGATGTGCTTTTAATCTACTAATTGCTCTAATTTGATTATGTTCTTCTGTTTCATATGTGATGGCTGGCACACCTAAAATAAAGCAGGCTTCCAAGAAGAGGCTGCCTCAGTTGTAACAGTCCAAGTATTTGTTTCTCTCCTGAAAAGTTCCAGTTGTAAAATACCAAATTGATCCATTGGAGACTTAAAATAGTTCCCAAGTTTTGAGATTATTTAAAAAACAACAACAGGGGCTGGAGAGATGGCTCAGCAATTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTGCTCATATTCATTAAATAAAAACATATTTTAAAAAAACCAAAAAAAAAAAAAAACAAAAAAAAAAACAACAAAATCCCTACTACCCCAAATGTACTTTCTGATGTTCTATTATCATTCTGTAAAAGTAAGCAAGGGTAATGGACCACTAATTCTAAACTTCATCTTGTGAAATACAGTTTTTATTCCATCTAGTATATATTTTTTTTTGGTTCTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCCTCCATCTGGTATATATATTTTTTTTATTAACTTGAGTATTTCTTATATACATTTCAAGTGTTATTCCCTTTCCCGGTTTCCGGACAAACATCCCCCTCCCCCCTCCCCTTCCATTTGGTATATTAACATGTGCATTTCTCCTTTATTGGTAAGGAAAAGAGAGATTATTGATTGACTTCTGAAATGAATTTTCTATGGTAGTGGAAAGGTTTTGTATCATTTTCAATATATTATGGCTATGGCTATGCATATATGTATGGATATATGCACACATGTTTATATGCATGTGTGTATGAATATATATACACATAATGTCAGCATGTGCATTGTTAGGATTTCATATGTTTAGTTTTATGTGTAGTAAGCTGTAAATCATATCTGTGCGTTTTAATTATAGTACTTAGCATTTTATTTAACCAGAAGAAATTTCTATCTGGGACATTCAGAGAAGTTTTCTGGAAGGAAAGAACAGTTAAGACTTGGGAGAAGTCTAAATGTAGATTGTGCAATTATTTTGAGTCAGGAGGATTGCCATGAATTTCAGGCCATCTTGTGCTACATACTAAGACCCTGTCATGGAGGTAGAGGATTGTCTCAGTTGGTAAATGCCTGCTGTACATGAGTGAGGACCTGAGTTTAATCTCAGCCCCCACACTGTTCAAAAGCTGACTGTGGAGATGCACAGTTGCACTCTAAAGTGCTGCAGAGGCAGACTCCAGTCCAGAGATCCTGTGCAAAAGTGGATGGCTCGGAAGAAATGACACCAAAGGCTGACCTCTGGCCTTTAAATACAGGTGTATACATGTGTGCTCATGTGACCATTCATACAAATGACTACTGTGGGGTGGGCCTAGCAATACCTGCCTTTGACCCCCATCACTAAATAGGTTGGATCAAAATTATCATGAATTCCAAGTCATTTTGGAACACATTTTAAGACCCTATCTCAAAAATGAATAAAATATGCATAATTATAAATTTCTGGGTAGAATAATAATAATATAATTGAGAAAATCTTAAGTAGTACTGTGCACAGCTAGTCACATCACATGCTCCAAATAGGTGGTAGAACGTGCCTCAAATTCCAGCACTTGAGAGGCAGAGGCAGATGGATCTCTGTGAGTTCAAGGCCACTTTATTCTACATAGTGAGTTTCATGTCAGCCAAGGCTACATAGTAGAACCCTGTCTCAAACAAGATGTGTAGCTGTGATCTAAAGTAGCCTAAACAGCTCTTAACAGACTTTGTAGGAAGACACATGCTATACATAAGGGGTAGAAGGTGAGGGAATAGTAGGAAACAGAGTTGTATGAGATGCGTATGAAAGAGGAGGCACAGTTCACGTTGCCAGCTGCTCCAAGGCCAGTTTGGGGACATACAGAACTAACTGGGAATGCGGAGTGATTTCATTTCTCTCAAAGTGGCATTCCAGTAGTAGTAAGAAAGAAGCATGAATTGACAAGCATCCTAGAGGTTGAATATGCCTATTGTCTGGTTTTGTAGAGTTGTTTTGAAACACAATTGTACTAATTTTGTACGTGACCATGATACAGTGACAGGGCTGTATAGTTTCTAGACCCATGGCTTGAAAGGCTTCAGACAATTATTATCTAGCCTGTTACAAAAATGATTTGGTGATCCTAGTATATAGGAAATAGAATAAAGGCAGGTCTGGAGGTCAGAGGGCTTTGTCCCTATAGCAGTGGTTCGGGAAGCAGACTTTGGGAAGGCCAAAGAGAGCTATTCTGAGGGTGAAGGAGACCACAGTGCTGTTGAAGAGACAGTCAGGGTGAAGGCATTTGGGACATCAGGAAAATTCCTACCAAGAAGGACAGAAAGAAGGGAAATCAAAGAAAGCAGCGTCAACTTCAAGAAGGCCCAGTCATACTGTGTTTTAAGAAAAAGCCCTCGGGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCTAAAGACAGCTACAGTGTACTTATATGTAATAAATAAATCTTTAAAAAAAAAAAAAGAAAAAGCCCTCACAGCTCAGGATAAACAAAGGATCAAGTAGGGAGGCAGAGGTGGCAGAGATGCCTCGAGAACAAGGTATAGGACTGATGAGATGGCTCAGCCAGTTAAGAACATAGACTGCTCTTCCAGAGAGTTCGATTCCCAGCAACCACATCTATAAAAGGCGTACAGCCATCTATAAAAGGATCTGATGCCTTCTTTTGGCAATTCTGTGTACATGCAGACAGCACGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGTAGAGTGTAGAGGAGAAAGTAGAAATTGGGAAGATTGGCTGTAGGAAGGAGTAAAATGAGATTGTCCTTAGGGAGGCTCGTTAGGTTAGCATGTAGAGGTAAATCAGATTCCAGTGGAAGGCAGTGACACTTGAAACTCTACTGTGAAACTGTCTAGAAACCACACGGCTACAGCATAGCCAAAGCTAAATGGCTGTTGACCACTTGGAACAGGAAATTTGAAAACTGACTTATGACTTCCAGTGTCTTAAGATTGTTATTGGTTTTTTGTTTGCTTGTTGTTTTTTTGTTTTGTTTCGTTTTGTTTGGGTTTTTTTGGGTGGGGGAGGTTCGTTTGTTTGTATTTTTCTATTGTAGTGGTGCATGCCTTTAATCTTAGCAAAGGCTAATGGATGTATGTGTGTTCAAGGCCAGCCTGGTATACAGTGTGAGCTCCAGGACAGCCAGGGCTACAGGAGAAACCCTGTCTTGAAAAAAATACAGAGATGTTCATGACATGTTTTCATATGGAAAAAGGTACAGTTGGAACCCTCAGACACTAGGAAACAGTTGAAACCAGAGTGAAAGCAATTCACCAGACAGTAGCTGGGAGCTCTTAAGCCTACTCCTGGAGAGAAACCCTTCTTGTCCTATGTTGGCGTCTGTAATGCTACTACAGCTGATTTCCGGTGTCCAGCAACCTCACAGTGCTCACTGAAAACTTAGTCCCTCCTGCTGACACCTGATTCTGTAACATGTGACTTGTTTAGGAATATAAAAAACAGCTGCAGCTTGCTGCCAAACATTTGCCAGATAGCCAGGAAGAGTGAGTGCCAGGTTAGAGTCACAAAGTTGCCACAAGCTATGTCTAAGAAAATTCTTTTTACAGTCTTCTGGGCCTAGAGAGCCCAAACAGGCTGAAGGGCAGCACTCAGCCAGCACTCGGTGGGGTAGTCAGTTAGGAAAAGAATGGGAGTTAGAGGGGCTCTGCCTCACAGACACTGCTGGGTAGACAGCACAGCAAACTCCAACTGACTTCACTGCTGCTGTTTCAAATACATAGCATCTTAAGAAAATAGCTAAGGTGTTTCTTTTTTTTCTTTTTTGCCAACTTCCAAGTGTTAAAGCTTAGTTCTAATTCTAAATAGAGGAAACTTCATGGCTAATATGAATGGCAAATACTAGAGTTCATTACAACTACATAAAGGAAATGCCAGAAATATCATTGAGAATGAAACAGTTCCAAAGTAGCAGTTACTTGGGAGATTATGGAATATTTTATAACAGTAAAATGAATATAAAGTAGATAAAAATAAGCAAATAGAAGTAGCATGGTTTTAATCACCTGTTCTGGTTTTGATTTCTCTCAGTCGAGCATGAACATGAATGACTCTTAAAAACAGTTTTCTTTTACTTAAAAATAAGTCTTCCTGTATAATAGTGACTTCTTACGAGGAACAGAACTTTGTCAAGGTCACTTTTGCAGAATATTTTAATGGGACATCATATGTGAGTATTAGTTTATCTTTCCCTTAAGTTTTATTTTCACCTTATACAATACTGGTATTTTAATCTTGGAATCAAGTGTGAGATTCATCAGTATATGTCAGGCATGGTGCTCACACCTTTAATCCCAGCATTCAGGAGGCAGAGGCAGGAGGATCTCTGAGTTCTCAGGGCAGTGTGGTCTATAGAGCCAGTTCCAGGACAACTAAGACTACACAGAGAAACTCTGTCTTGAGAAATAAAACATAGAACCCACGGGCACAGAAACAATTAAAAATTAAGTTTTAATTGAATTTTAAATAGATTCTTTTAATCTCAACTTTATTATATAAATACTTTTTGTTATTTTAGGCTATTTAAAATTACCTTTGGGGCAGTCTTAAAAAATAATAAATGTCACACCAAAAAGTTGATGCAATTTATTATCTTCAGAAACCTGAGGATTTCTAATCAGCGTATCGCTGTAGATGCGATTTCTATGTTATGATGACTATAAGTCAATGATTTCCTAATTTGCTCAGTACCATTCTTAAAAGCTGAGTGTCCTCCAAATATACACAGCAGCTCCTCCATTTCTTAGGAAACGAGTCTCAGTTTAACCAGCTTAAGCTGTGGCGTTGTCAATAACGTTAGGTGTGCCAGCCATTACGGGCAGTTTCCTTACCAAGTGATGCTGCATGGACTAGCTAACTGTCAGACTTCTGCAGAAGCTGGTCACAGCGCAGATGCACTCTTGTATCAGACTCCACTGAAAAGCAAGAGAGAGTTTTTTTTTTTCCGCTTGGCTGCCAATCGCTGTGCCTCAGATTCCTTTTTCCCATCTATTTCTGTTTTGAATTGAGCATAGAGGTCAATATTTCCTCTTTCTTCTTCCCACTTCTCCCCATTATCAACTACAG
Seq C2 exon
GTGTTCAGCATGTTTTTGGAGACCCTAGTAGATTTCATACAAGTCCACAAAGATGATCTTCAAGATTGGTTGTTTGTTCTGCTGACACAACTGCTGAAAAAAATGGGTGCTGACTTGCTTGGGTCTGTTCAGGCAAAGGTTCAGAAAGCCCTTGATGTTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009161:ENSRNOT00000012545:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF123483=CLASP_N=FE(9.3=100)
A:
NA
C2:
PF123483=CLASP_N=FE(23.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]