RnoEX0021766 @ rn6
Exon Skipping
Gene
ENSRNOG00000000728 | Clic2
Description
chloride intracellular channel 2 [Source:RGD Symbol;Acc:1306580]
Coordinates
chr20:304985-309693:+
Coord C1 exon
chr20:304985-305110
Coord A exon
chr20:308761-308867
Coord C2 exon
chr20:309512-309693
Length
107 bp
Sequences
Splice sites
3' ss Seq
CACCTCTGCTTCTTTTTAAGGTA
3' ss Score
10.55
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
AAAACCTGAAGAACTGAAGGACTTAGCCCCAGGTACCAACCCACCATTCTTGATATATAACAAAGAGTTGAAAACAGACTTCATTAAAATTGAGGAGTTTCTAGAGAAGACACTCGCTCCTCCAAG
Seq A exon
GTATCCTCATCTGAGTCCCAAGTACAAGGAATCTTTCGATGTGGGCTGTAATCTCTTTGCCAAATTTTCTGCGTACATTAAGAATACACAAAAGGAAGCAAATAAGA
Seq C2 exon
ATTTTGAAAAATCTCTGCTTAGAGAATTTAAACGTTTGGATGACTACTTAAATACCCCACTTCTGGATGAAATTGATCCTGACAGCACCGAGGAACGTACACTTTCCAGAAGACTGTTCTTGGATGGGGATCAACTAACACTGGCTGACTGTAGTTTGTTGCCCAAACTGAACATTATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000728-'4-8,'4-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.000 C2=0.033
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(55.3=100),PF134101=GST_C_2=PU(15.4=51.2)
A:
PF134171=GST_N_3=PD(3.9=8.1),PF134101=GST_C_2=FE(25.2=100)
C2:
PF134101=GST_C_2=FE(42.0=100)
Main Skipping Isoform:
ENSRNOT00000000955fB3203
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACTTAGCCCCAGGTACC
R:
GCCAGTGTTAGTTGATCCCCA
Band lengths:
255-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]