BtaEX6005233 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010948 | CLIC2
Description
Bos taurus chloride intracellular channel 2 (CLIC2), mRNA. [Source:RefSeq mRNA;Acc:NM_001081727]
Coordinates
chrX:38512023-38521056:+
Coord C1 exon
chrX:38512023-38512148
Coord A exon
chrX:38520083-38520189
Coord C2 exon
chrX:38520875-38521056
Length
107 bp
Sequences
Splice sites
3' ss Seq
CAGTGATATTTCTTTTTAAGGTA
3' ss Score
7.9
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
Exon sequences
Seq C1 exon
AAAGCCCAAAGAGCTGAAGGACTTAGCCCCAGGCACCAATCCGCCCTTCCTGGTATATAACAAGGAGTTGAAAACAGACTTCATTAAAATTGAGGAGTTTCTAGAGCAGACACTGGCTCCTCCAAG
Seq A exon
GTATCCTCACTTGAGTCCCAGGAACAAGGAGTCCTTTGATGTGGGCTGTAATCTCTTTGCCAAGTTTTCTGCATACATTAAGAATACACAAAAGGAGGCCAATAAGA
Seq C2 exon
CCTTTGAAAAATCTCTGCTTAAGGAATTTAAGCGTCTGGATGACTATTTGAACACCCCACTTCTGGATGAAATTGATCCAGACAGTACTGAGGAACTCACAGTCTCCAGAAGATTGTTCTTGGATGGCGATCAACTGACCCTGGCTGACTGTAGTTTGTTACCCAAACTGCACATTATTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010948-'4-4,'4-3,7-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.027 C2=0.016
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(16.0=53.5)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.0=100)
C2:
PF134101=GST_C_2=FE(41.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGAAGGACTTAGCCCC
R:
GGTCAGTTGATCGCCATCCAA
Band lengths:
257-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]