GgaEX1015720 @ galGal4
Exon Skipping
Gene
ENSGALG00000004730 | CLIC2
Description
chloride intracellular channel protein 2 [Source:RefSeq peptide;Acc:NP_001026285]
Coordinates
chr4:1803086-1804093:-
Coord C1 exon
chr4:1803968-1804093
Coord A exon
chr4:1803392-1803498
Coord C2 exon
chr4:1803086-1803267
Length
107 bp
Sequences
Splice sites
3' ss Seq
ACCCCGGCATCTCCTTCCAGGTA
3' ss Score
9.82
5' ss Seq
GCAGTAAGG
5' ss Score
4.69
Exon sequences
Seq C1 exon
GAAACCCGAAGAGCTGAAAGATTTAGCACCAGGCACCAACCCGCCCTTCCTGCTGTTCAACCGGGAGCTGAAAACTGACTTCATCAAGATCGAGGAGTTCCTGGAGCAGACCCTGTGCCCACCCAC
Seq A exon
GTACCCTCATCTGAGCCCCAAATATAAGGAGTCCTTCGACGTGGGCAGTGACATCTTCGCCAAGTTCTCGGCGTACATCAAGAACTCACGCAAGGAAGCAAATAGCA
Seq C2 exon
ACCTGGAGAAGGCTCTGCTGCGGGAGTTTCAGAGGCTGGATCAGTACCTCACCACCCCACTGCCCGAGGAGATCGACCAGGACAGCGTGGAGGACATCACCATCTCCAAGAGGAAATTCCTGGATGGGGACCACCTGACTCTGGCTGACTGCAACCTGCTGCCCAAGCTGCACATCATCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004730_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.140 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(15.4=51.2)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(25.2=100)
C2:
PF134101=GST_C_2=FE(42.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCGGGAGCTGAAAACTGAC
R:
TTGATGATGTGCAGCTTGGGC
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]