BtaEX6047630 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015085 | CLIC3
Description
Bos taurus chloride intracellular channel 3 (CLIC3), mRNA. [Source:RefSeq mRNA;Acc:NM_001100301]
Coordinates
chr11:106229988-106230588:+
Coord C1 exon
chr11:106229988-106230113
Coord A exon
chr11:106230231-106230337
Coord C2 exon
chr11:106230413-106230588
Length
107 bp
Sequences
Splice sites
3' ss Seq
CGAACCCCCTCCCACTCCAGATT
3' ss Score
7.94
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
Exon sequences
Seq C1 exon
GTCCCCGGAGGTGCTGAAGGACTTCGCCCCAGGCTCCCAGCTGCCCATCCTGCTCTGCGACGGCGACGCCAAAACCGACACGCTGCAGATCGAGGAGTTTCTGGAGGAGACGCTGGGGCCCCCAGA
Seq A exon
ATTCCCCAGCTTGGCGCCCAGATACAGGGAGTCTACCGCAGCGGGCAACGACGTCTTTCACAAGTTCTCCGCCTTCATCAAGAACCCAGTGCCCGCACAGGACGACG
Seq C2 exon
CTCTGTACCAGCAGCTGCTGCGCGCCCTCGCCAAGCTGGACAGCTACCTGCGCGCGCCCCTGGAGCACGAGCTGGGCCGCGAGCCGCAGCTGCGCGAGTCCCGCCGCCGCTTTCTGGACGGCGATCAGCTCACGCTGGCCGACTGCGGCCTGCTGCCCAAGCTGCACGTCGTGAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015085-'2-5,'2-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=0.189 C2=0.068
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(9.2=27.9)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(27.5=100)
C2:
PF134101=GST_C_2=FE(44.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGTGCTGAAGGACTTCGC
R:
CTGATCGCCGTCCAGAAAGC
Band lengths:
247-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]