DreEX6072631 @ danRer10
Exon Skipping
Gene
ENSDARG00000103340 | clic1
Description
chloride intracellular channel 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3202]
Coordinates
chr19:17472106-17475522:+
Coord C1 exon
chr19:17472106-17472231
Coord A exon
chr19:17474337-17474443
Coord C2 exon
chr19:17474861-17475522
Length
107 bp
Sequences
Splice sites
3' ss Seq
GCTACAATTTATTCCTCCAGATA
3' ss Score
6.92
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAAACCAGAAATTCTAAAAGATCTGGCCCCTGGTGCTCAGCCTCCTTTCTTGCTATATGGTACAGAGGTGAAGACAGACACCAACAAAATAGAAGAGTTCTTGGAAGAAACACTCTGTCCTCCTAA
Seq A exon
ATATCCACGGCTGGCAGCTTGCAATCCTGAATCTAACACTGCAGGTCTTGATGTGTTCTCTAAGTTCTCAGCCTACATTAAAAATTCAAACCCTCAGATGAACGACA
Seq C2 exon
CTGTGAGGTTCATGACCAACTGATCGGTTGTCATCAGGAAGTATGGACTCATTTCACTCTTCGGCATTTGCGAAACTATGTAAACACAGCATTGGCTGCTGCTGAAGTGAATGTGTTTTTGCACTAGCTCAAATATTTTCCTATCTTTTAAGTTTAGGGATGTTGACTGACTTGTGAAACTCGAGAAAGTCTACAAGTTCTTTGAGTACAAGTTGTACAAGTACAACAACTACAAGTAATTTTCGACTTGTGCGTCTACACAGCTGTTGACTTCACGGAACACTTAATATTATCTTGCCTTTTCTTCTGTTATCACTGAACTTAAAACCTTCTGCCCTTACAATGTGATGCATCCCTGTTTTTCAAGATAGTTGTAGACTCTGTTGGCCCTGGTCTGATACCTCTCTTAAATAAGTGTTTACAGACTGGTTCGGTTCCTTTAAGTCTGAAAGTGGCCCCAGTTACCCCTCTGCTCAAAAAGCCTTCCTTAGACACCTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000103340-'4-5,'4-4,5-5=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(56.9=95.3)
A:
PF134101=GST_C_2=PU(5.6=13.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTACAGAGGTGAAGACAGACA
R:
TCACAAGTCAGTCAACATCCCT
Band lengths:
246-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]