BtaEX0009226 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013533 | CLIC1
Description
Bos taurus chloride intracellular channel 1 (CLIC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001015608]
Coordinates
chr23:27393342-27397276:+
Coord C1 exon
chr23:27393342-27393553
Coord A exon
chr23:27396553-27396659
Coord C2 exon
chr23:27397095-27397276
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCCATTGGCTTTTAGGTA
3' ss Score
11.05
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GCCGGACTGGTGGAGAGGCCGCGTCTGGAGTGAGCGGGTCTGATCGGGCTCGTGTGGCGCTGAAGGGCCAGCCCTAGGTCTGGGGGAGAGAATCTCTTCTGTGAGACCGCCTTCCCTGCCCGGCCCCTCCCAGTTCCCCCAGCGACGGCTGCTTCCTGGTCCCCGTCGCAACCATGGCTGAAGAACAACCGCAGGTCGAATTGTTCGTGAAG
Seq A exon
GTACCCCAAGCTGGCAGCTCTGAACCCTGAATCCAACACAGCTGGGCTGGACATATTTGCCAAATTCTCTGCCTACATTAAGAATTCAAACCCAGCACTCAATGACA
Seq C2 exon
ACCTGGAGAAGGGGCTCCTGAAAGCCCTGAAAGTATTAGACAATTACCTGACATCCCCCCTCCCAGATGAAGTAGATGAGACCAGTGCTGAGGATGAGGGGATCTCTCAGAGGAAATTTCTGGATGGCAATGAGCTCACTCTGGCTGACTGCAATCTGTTGCCCAAGCTCCACATAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013533_MULTIEX1-3/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.148
Domain overlap (PFAM):
C1:
NO
A:
PF134101=GST_C_2=PU(5.6=13.5)
C2:
PF134101=GST_C_2=FE(66.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTAGGTCTGGGGGAGAGAA
R:
GATCCCCTCATCCTCAGCACT
Band lengths:
245-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development