RnoEX0021760 @ rn6
Exon Skipping
Gene
ENSRNOG00000029682 | Clic1
Description
chloride intracellular channel 1 [Source:RGD Symbol;Acc:1303043]
Coordinates
chr20:5042678-5045456:+
Coord C1 exon
chr20:5042678-5042803
Coord A exon
chr20:5042939-5043045
Coord C2 exon
chr20:5045275-5045456
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTTATCCCTCTGCCTTCCAGGTA
3' ss Score
10.93
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACGGACAGAGACGGTACAGAAGCTTTGCCCCGGTGGGCAGCTCCCGTTCCTGCTCTACGGCACCGAAGTGCACACAGATACCAACAAAATCGAGGAGTTCCTGGAGGCCGTGCTGTGCCCTCCCAG
Seq A exon
GTACCCAAAGTTGGCTGCTCTGAACCCCGAATCCAACACCTCGGGGCTGGACATATTTGCCAAGTTTTCTGCCTACATCAAGAACTCAAACCCGGCCCTCAATGACA
Seq C2 exon
ACCTAGAGAAGGGACTCCTGAAAGCCCTGAAGGTTCTAGACAATTACTTGACATCCCCCCTCCCGGAAGAAGTGGATGAAACCAGCGCCGAGGATGAGGGCATCTCTCAGAGGAAGTTTCTGGATGGCAATGAGCTCACCCTGGCTGACTGCAACCTGCTGCCAAAGCTTCACATAGTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029682-'11-7,'11-5,12-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.035 A=0.000 C2=0.197
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=PD(57.7=95.3)
A:
PF134101=GST_C_2=PU(5.6=13.5)
C2:
PF134101=GST_C_2=FE(66.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACGGTACAGAAGCTTTGCC
R:
GGTGAGCTCATTGCCATCCAG
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]