MmuEX6077342 @ mm10
Exon Skipping
Gene
ENSMUSG00000007041 | Clic1
Description
chloride intracellular channel 1 [Source:MGI Symbol;Acc:MGI:2148924]
Coordinates
chr17:35052781-35055408:+
Coord C1 exon
chr17:35052781-35052906
Coord A exon
chr17:35053033-35053139
Coord C2 exon
chr17:35055227-35055408
Length
107 bp
Sequences
Splice sites
3' ss Seq
TTTATCCCTCTGCCTTCCAGGTA
3' ss Score
11.37
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
ACGGACAGAGACTGTACAGAAGCTCTGCCCCGGTGGGCAGCTGCCGTTCTTGCTCTATGGCACCGAAGTGCACACAGACACCAACAAGATCGAGGAATTCCTGGAGGCCATGCTGTGCCCTCCCAG
Seq A exon
GTACCCAAAGCTGGCTGCCCTGAACCCTGAGTCCAACACCTCGGGACTGGACATATTTGCAAAGTTTTCTGCCTACATCAAGAACTCAAACCCAGCCCTCAATGACA
Seq C2 exon
ACCTAGAGAAGGGACTCCTGAAAGCCCTGAAGGTTCTAGACAATTACCTGACATCCCCCCTCCCAGAAGAAGTGGATGAAACCAGCGCCGAAGATGAGGGCATCTCTCAGAGGAAGTTTCTGGACGGCAATGAGCTCACCCTGGCTGACTGCAACCTGCTGCCAAAGCTTCACATAGTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007041-'15-6,'15-4,16-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=0.000 C2=0.197
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(58.3=100)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(5.6=13.5)
C2:
PF134101=GST_C_2=FE(66.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACAGAGACTGTACAGAAGC
R:
GCCGTCCAGAAACTTCCTCTG
Band lengths:
253-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types