GgaEX1015723 @ galGal4
Exon Skipping
Gene
ENSGALG00000026027 | CLIC3
Description
chloride intracellular channel 3 [Source:HGNC Symbol;Acc:HGNC:2064]
Coordinates
chr17:416739-417418:-
Coord C1 exon
chr17:417293-417418
Coord A exon
chr17:417055-417161
Coord C2 exon
chr17:416739-416914
Length
107 bp
Sequences
Splice sites
3' ss Seq
CTGTGCCCATGTCACCGCAGGTT
3' ss Score
9.37
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GGCACTGGATGTGCTGAAGGATTTTGCGCCCGGCGCTCAGTTGCCTGTTCTGCTCTACAACGGAGACTCCAAGACCGACACAGTCACCATCGAGGACTTCCTGGAGGCCAGGCTGGCCCCCCCCAC
Seq A exon
GTTCCCCAGCCTGGTCCCGCGGTACAAGGAGTCAAGGCTGGCTGGAAACGACATCTTTCACAAGTTCTCCACCTTCATCAAGAACCCAGTGCCTGCTCAGGATGAGG
Seq C2 exon
CGCTGCAGCGGAACCTGCTGAAGGCCCTGCTGAAGCTGGATGAGTACCTGAGCACACCCCTGGAGCATGAGCTGGCCCGTGAGCCCCACCTCCGAACCTCCCAGCGCCGCTTCCTCGATGGCGACCAGCTCACGTTGGCTGACTGCAACCTGCTGCCCAAGCTCAACATCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026027-'3-4,'3-3,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.017
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100),PF134101=GST_C_2=PU(13.1=41.9)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=FE(26.3=100)
C2:
PF134101=GST_C_2=FE(42.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGTTCTGCTCTACAACGG
R:
ACGATGTTGAGCTTGGGCAG
Band lengths:
256-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]