RnoEX0021780 @ rn6
Exon Skipping
Gene
ENSRNOG00000026870 | Clic6
Description
chloride intracellular channel 6 [Source:RGD Symbol;Acc:727938]
Coordinates
chr11:32687616-32690018:+
Coord C1 exon
chr11:32687616-32687741
Coord A exon
chr11:32689054-32689160
Coord C2 exon
chr11:32689837-32690018
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCAATTGTGAACTCCTCAAGGTA
3' ss Score
2.86
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GAAGCCTGCAGACCTGCAGAACCTGGCTCCTGGGACCAACCCTCCTTTCATGACTTTTGATGGTGAAGTCAAGACAGATGTGAATAAGATTGAGGAGTTCTTAGAGGAGAAGTTAGTCCCCCCGAG
Seq A exon
GTACCCTAAGCTGGGAACCCAACACCCCGAATCCAACTCAGCGGGAAATGACGTTTTTGCCAAATTCTCAGCGTTTATTAAGAACACCAAGAAGGATGCAAATGACA
Seq C2 exon
TTTATGAAAAGAACCTACTACGGGCCCTGAAGAAGCTGGACAGTTACTTAAACAGCCCGCTGCCAGACGAAATAGATGCCTACAGTACGGAGGATGTCACTGTTTCCCAGAGGAAGTTTCTGGATGGGGATGAGCTCACACTGGCCGACTGTAACCTCTTACCCAAGCTTCACATCATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026870-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.504 A=0.243 C2=0.033
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(11.1=24.3)
C2:
PF134101=GST_C_2=FE(63.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCAACCCTCCTTTCATGAC
R:
GTTACAGTCGGCCAGTGTGAG
Band lengths:
249-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]