HsaEX6006073 @ hg19
Exon Skipping
Gene
ENSG00000159212 | CLIC6
Description
chloride intracellular channel 6 [Source:HGNC Symbol;Acc:2065]
Coordinates
chr21:36080242-36081836:+
Coord C1 exon
chr21:36080242-36080367
Coord A exon
chr21:36080998-36081104
Coord C2 exon
chr21:36081655-36081836
Length
107 bp
Sequences
Splice sites
3' ss Seq
CCAATTTTGAACTTTTCAAGGTA
3' ss Score
6.15
5' ss Seq
AGAGTGAGT
5' ss Score
7.36
Exon sequences
Seq C1 exon
GAAACCCGCAGACCTGCAGAACCTGGCTCCCGGAACAAACCCTCCTTTCATGACTTTTGATGGTGAAGTCAAGACGGATGTGAATAAGATCGAGGAGTTCTTAGAGGAGAAATTAGCTCCCCCGAG
Seq A exon
GTATCCCAAGCTGGGGACCCAACATCCCGAATCTAATTCCGCAGGAAATGACGTGTTTGCCAAATTCTCAGCGTTTATAAAAAACACGAAGAAGGATGCAAATGAGA
Seq C2 exon
TTCATGAAAAGAACCTGCTGAAGGCCCTGAGGAAGCTGGATAATTACTTAAATAGCCCTCTGCCTGATGAAATAGATGCCTACAGCACCGAGGATGTCACTGTTTCTGGAAGGAAGTTTCTGGATGGGGACGAGCTGACGCTGGCTGACTGCAACCTCTTACCCAAGCTCCATATTATTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159212-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.419 A=0.243 C2=0.016
Domain overlap (PFAM):
C1:
PF134171=GST_N_3=FE(57.5=100)
A:
PF134171=GST_N_3=PD(0.1=0.0),PF134101=GST_C_2=PU(17.5=48.6)
C2:
PF134101=GST_C_2=FE(58.3=100),PF075506=DUF1533=PU(72.9=57.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGGAACAAACCCTCCTTTCA
R:
TAAGAGGTTGCAGTCAGCCAG
Band lengths:
258-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)